Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0686
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529...    31   0.62 
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493...    31   1.1  
10_08_0136 - 15122420-15122469,15123845-15124334,15124822-151249...    29   2.5  
02_01_0100 + 743467-744868,745066-745127                               29   3.3  
10_04_0010 - 7487455-7489490,7489569-7489980                           29   4.4  
04_04_1434 - 33568258-33569415                                         28   5.8  
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761...    28   7.6  
04_04_1055 + 30444235-30446649                                         28   7.6  
02_01_0752 - 5583757-5584092                                           28   7.6  
01_06_0128 - 26727484-26728383                                         28   7.6  
01_06_0049 - 25953811-25954131,25954223-25954903                       28   7.6  
01_03_0308 - 14883728-14884120                                         28   7.6  

>03_06_0758 -
           36052261-36052301,36052463-36052697,36052895-36052966,
           36056477-36056567,36056650-36056872,36056964-36057300,
           36057406-36057588
          Length = 393

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 236 SDH-PLPVDDRATASKHSAGWIHHAEGGVVGVLTGSR 129
           +DH P P DDRAT+  H     HH  GG  G   G R
Sbjct: 80  ADHSPSPRDDRATSWDHGRHHHHHNSGGRRGSFGGRR 116


>01_06_0102 -
           26447286-26448107,26448248-26448385,26448990-26449359,
           26449505-26449606,26449696-26449788,26449934-26450181,
           26451088-26451274,26451825-26452043,26452464-26452660,
           26453545-26453875,26454099-26454457,26455141-26455240,
           26455349-26455464,26455547-26455663,26455782-26455880,
           26456057-26456131,26456205-26456286,26457724-26457763,
           26458685-26458769,26458924-26459055
          Length = 1303

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 513 SLDEWCYSRGPELGILACCRQPDLRPQLRHPDYA 614
           S+  WC+ R P L IL C +   +   + HP Y+
Sbjct: 225 SVASWCHPRAPNLDILTCVKDSHIW-AIEHPTYS 257


>10_08_0136 -
           15122420-15122469,15123845-15124334,15124822-15124935,
           15125022-15125303,15125422-15125591,15125670-15125757,
           15126128-15126173,15126254-15126336,15126595-15126694,
           15127002-15127081,15127200-15127283,15127373-15127531,
           15128617-15128772,15129634-15130197
          Length = 821

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 599 PKLRAQVGLATARKYTQFRTSGVAPFVQRRH 507
           P  R+ VG A AR        G APF  +RH
Sbjct: 54  PSFRSPVGAAAARAGASLAALGAAPFYPKRH 84


>02_01_0100 + 743467-744868,745066-745127
          Length = 487

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -1

Query: 227 PLPVDDRATASKHSAGWIHHAEGGVVGVLTGSRLPTRYNTEICGIYIFV 81
           PLP DD ATA   S  W++  +   V     S   T ++T   G+ I V
Sbjct: 25  PLPADDDATAGV-SPSWVYLEDRAYVSPDAVSNSTTAFSTTTTGVSIHV 72


>10_04_0010 - 7487455-7489490,7489569-7489980
          Length = 815

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -2

Query: 511 DMTAGIH---GESVVVPEGISRRLHTNWLEVSG 422
           D   GIH   G++ VV + +SR+ H N LEV G
Sbjct: 312 DYDVGIHYHPGKANVVADALSRKSHCNTLEVRG 344


>04_04_1434 - 33568258-33569415
          Length = 385

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
 Frame = +2

Query: 239 SSLCC---RRITVVIRAGV--TNLTTPEYISESTE----WYNYPTYDDTRPNLVQPNDIS 391
           ++LCC   RR+T+ +   V  T+L T   + E  E    W+N+  YDD    +   N I 
Sbjct: 99  ANLCCSNGRRLTLCLPKLVLQTDLVTGA-VDELPEMPFYWFNFIVYDDADRRMYCVNTIF 157

Query: 392 LLRLHRPV 415
           ++RL R +
Sbjct: 158 VVRLARAI 165


>05_03_0619 +
           16274255-16274396,16274775-16274848,16275111-16276139,
           16276484-16276702,16277228-16277250,16277482-16277606,
           16279480-16279670,16280202-16280360,16281359-16281598
          Length = 733

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
 Frame = -1

Query: 251 NTVSCSDHPLPVDDRATASKHSAGWIHHAEGGVVG----VLTGSRL--PTRYNTEICGIY 90
           N   C+ H +P++ +++ SK    W+++A   VV      L  +R+  P  Y+   C + 
Sbjct: 362 NPALCT-HRIPIEPKSSPSKEPQRWLNNAMREVVKKDVLKLLHTRIIYPVPYSEWRCMMS 420

Query: 89  IFVDIFNEV 63
           IF D+  E+
Sbjct: 421 IFSDMIEEI 429


>04_04_1055 + 30444235-30446649
          Length = 804

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 578 RLAPSTSAP*LRRMRSAPDSSM*RHSLL 661
           RL  S  A  LRR RS PD+++ R+SLL
Sbjct: 122 RLGRSVHAHMLRRARSLPDTAVLRNSLL 149


>02_01_0752 - 5583757-5584092
          Length = 111

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 193 NTPPVGSTMRRAAWWG 146
           N PP G   +RA WWG
Sbjct: 3   NVPPAGGRRQRAWWWG 18


>01_06_0128 - 26727484-26728383
          Length = 299

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 177 DPPCGGRRGGGADRESPPNQI 115
           D  CGGRR G   RE PP Q+
Sbjct: 23  DEGCGGRRVGSMVRELPPAQM 43


>01_06_0049 - 25953811-25954131,25954223-25954903
          Length = 333

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 579 DLRPQLRHPDYAECDLRQILQCDVTVY 659
           +LRP +RHP Y     R +L  DV  Y
Sbjct: 287 ELRPVIRHPRYKTAVCRMVLAGDVCPY 313


>01_03_0308 - 14883728-14884120
          Length = 130

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/70 (25%), Positives = 29/70 (41%)
 Frame = +3

Query: 414 SSLPDTSSQFVCNRRLMPSGTTTDSPCMPAVMSSLDEWCYSRGPELGILACCRQPDLRPQ 593
           +S  DT +  + +   + + T + SP      S +DE    R PE+G     R+P L   
Sbjct: 25  ASRTDTGATALPSPSPIENSTASRSPFPTTSPSMIDEQTTERAPEIGGAVAGRKPSLAEL 84

Query: 594 LRHPDYAECD 623
            R      C+
Sbjct: 85  WRRHRRCSCN 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,539,927
Number of Sequences: 37544
Number of extensions: 522451
Number of successful extensions: 1711
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1710
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)