Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0686
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    37   1e-04
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    28   0.069

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 37.1 bits (82), Expect = 1e-04
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +3

Query: 108 RIVSGWEATPGQHPHHAALRMVDPTGGVFACGGSIVHREWVITAAHCVADASRWSFA 278
           RIV G      + P  A ++     G +  CG +I+ + +V+TAAHC+ D +    A
Sbjct: 160 RIVGGTNTGINEFPMMAGIKRTYEPGMI--CGATIISKRYVLTAAHCIIDENTTKLA 214



 Score = 27.5 bits (58), Expect = 0.12
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +2

Query: 338 YPTYDDTRPNLVQPNDISLLRLHRPVVFTRYLQP--IRVQSSADAFRNYDGLTVYASGH 508
           +P YD    +  Q NDI+LL+  + + F   + P  +  Q   D+F   D +TV   GH
Sbjct: 242 HPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSD-VTVLGWGH 299


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 0.069
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 113 NTEICGIYIFVDIFNEVGLDFLGKALPTKHK 21
           N E+CGIY   +   ++ ++F+   +P +H+
Sbjct: 88  NEEVCGIYFLAEPDQKIEINFITFDIPCEHR 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,492
Number of Sequences: 438
Number of extensions: 4729
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)