Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0685
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    96   3e-21
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    25   7.1  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 96.3 bits (229), Expect = 3e-21
 Identities = 45/90 (50%), Positives = 62/90 (68%)
 Frame = +2

Query: 224 TI*SIPNSLINTIILIRSGVTVT*AHHSLIENNFSQTKQRLFLTILLGFYFTILQAYEYI 403
           TI  +   L+NT+IL+ SG ++T AH+SLI  N     + L++TI L F F   QAYEY 
Sbjct: 135 TIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLYMTIALSFLFLGGQAYEYW 194

Query: 404 EASFTIADRIYGSTFFIATGFHGIHVIIGT 493
            A FTI+D +YG++F+ ATG HGIH+I+GT
Sbjct: 195 NAPFTISDSVYGASFYFATGLHGIHIIVGT 224



 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +3

Query: 9   LLTAYQ**RDISREGTYQGKHTILVNKGLR*GXXXXXXXXXXXXXXXXXXXXHRRLSPNI 188
           L T Y   RD+S E    G HT  V KGL+ G                    H  LSP  
Sbjct: 61  LATMYLWFRDMSTEANIHGAHTKAVTKGLKIGFMLFLISETFLFASIFWAFFHSSLSPTF 120

Query: 189 EIGRI*PPSRIT--PFNPFQIPLL 254
           E+G + PP  I     +P ++PLL
Sbjct: 121 ELGAVWPPVGIADKTIDPLEVPLL 144



 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 22/41 (53%), Positives = 24/41 (58%)
 Frame = +1

Query: 505 NCYIRHLNNHFSKNHHFGFEAAA*Y*HFVDVV*LFLYISIY 627
           N Y  HL N     HH GFE    Y HF DVV LFLY++IY
Sbjct: 233 NIYTYHLTN----THHNGFECGIYYWHFCDVVWLFLYLTIY 269


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +2

Query: 311 IENNFSQTKQRLFLTILLGFYFTILQAYE 397
           +  ++S T  RL++ ++ G Y + L++Y+
Sbjct: 8   LSRSYSTTSPRLYVDVVQGLYISSLKSYK 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,809
Number of Sequences: 5004
Number of extensions: 35385
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)