Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0685
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0743 - 5530184-5531078,5531160-5531405,5531815-5532450,553...    29   2.4  
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099...    28   5.5  
03_02_0320 + 7437528-7437623,7437725-7437772,7438885-7438994,743...    28   7.3  
12_01_0189 + 1397068-1397241,1397713-1397804,1398456-1398546,139...    27   9.7  

>02_01_0743 -
           5530184-5531078,5531160-5531405,5531815-5532450,
           5534499-5534607,5536157-5536321,5536446-5536543,
           5536648-5536898
          Length = 799

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 286 CYPRSN*NDCINKGIWNGLNGVILEGGHILPISIFGD 176
           CY   N ++C +  I    +  I +G H+L +S+ GD
Sbjct: 282 CYTPVNGSECFDADILAAFDAAIHDGVHVLSVSLGGD 318


>07_03_0529 -
           19107949-19108152,19108857-19109147,19109817-19109939,
           19110019-19110306
          Length = 301

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 269 IRSGVTVT*AHHSLIENNFSQTKQRLFLTILLGFYFTILQAYEYIEASFTIADR 430
           + + V +  +HH  ++    Q   +  L I+   +F++LQ Y Y  A ++ ADR
Sbjct: 240 VLAAVGIIQSHHFWLDVEHIQEAIQNVLVIIEMVFFSVLQQYAYHVAPYSGADR 293


>03_02_0320 +
           7437528-7437623,7437725-7437772,7438885-7438994,
           7439651-7439735,7439839-7440115,7440296-7440454,
           7440563-7440666,7440930-7441168,7441265-7441583,
           7441665-7442069,7442157-7442294,7442376-7442555
          Length = 719

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 187 LKLEEYDPLQELHHLIHSKFPY*YNHFN*IWGNSNMSS 300
           L+ +E++P  EL      K      H N  WGNSN++S
Sbjct: 291 LEKDEHNPHLELTLSARKKISSVLEHLNRKWGNSNIAS 328


>12_01_0189 +
           1397068-1397241,1397713-1397804,1398456-1398546,
           1398931-1399052,1399142-1399289,1399596-1399665,
           1400465-1400517,1400678-1400822,1401308-1401426,
           1401480-1401527,1401528-1401599,1401902-1402024,
           1402025-1402131,1402437-1402547,1402585-1402777,
           1402959-1403129,1403548-1403673
          Length = 654

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 298 SSLIDRK*LLTNKTKIIFNYFIRILFYYFTS 390
           SSL  R+  + +  K++ NY+  ILF  F S
Sbjct: 393 SSLASRRPRILDTQKVLINYYAMILFQVFVS 423


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,736,332
Number of Sequences: 37544
Number of extensions: 181384
Number of successful extensions: 309
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)