Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0685
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    24   1.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    24   1.4  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   4.4  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   5.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   7.7  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   7.7  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = +1

Query: 481 NNWNFISINCYIRHLNNHFSKNHHFGFE 564
           NN+ + + N Y  + NN+++ N++  ++
Sbjct: 87  NNYKYSNYNNYNNNYNNNYNNNYNNNYK 114



 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 454 SNRISWNSCNNWNFISINCYIRHLNNHFSK 543
           SN   +++ NN+N    N Y  + NN++ K
Sbjct: 86  SNNYKYSNYNNYNNNYNNNYNNNYNNNYKK 115


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = +1

Query: 481 NNWNFISINCYIRHLNNHFSKNHHFGFE 564
           NN+ + + N Y  + NN+++ N++  ++
Sbjct: 87  NNYKYSNYNNYNNNYNNNYNNNYNNNYK 114



 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 454 SNRISWNSCNNWNFISINCYIRHLNNHFSK 543
           SN   +++ NN+N    N Y  + NN++ K
Sbjct: 86  SNNYKYSNYNNYNNNYNNNYNNNYNNNYKK 115


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 481 NNWNFISINCYIRHLNNHFSKNHH 552
           NN+N+ + N Y  + NN+  K ++
Sbjct: 87  NNYNYSNYNNYNNNYNNYNKKLYY 110


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 454 SNRISWNSCNNWNFISINCYIRHLNNHFSKNHHFGFE 564
           SN   +++ NN+N  + N Y  +    + KN+    E
Sbjct: 319 SNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYIINIE 355


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 380 ILQAYEYIEASFTIADRIYGST 445
           +LQA EYIE     A+  Y ST
Sbjct: 6   LLQAAEYIERREREAEHGYAST 27


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 481 NNWNFISINCYIRHLNNHFSKNHHF 555
           NN+ + + N Y  + NN+ + N+++
Sbjct: 320 NNYKYSNYNNYNNNYNNYNNYNNNY 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,686
Number of Sequences: 438
Number of extensions: 2556
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)