Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0684
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    92   6e-20
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    42   1e-04
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   5.7  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   7.5  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   9.9  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 92.3 bits (219), Expect = 6e-20
 Identities = 62/172 (36%), Positives = 85/172 (49%), Gaps = 5/172 (2%)
 Frame = +3

Query: 171 NPLFEKRPKNFAIGQGIQPTRDLSRFVRGPSISASSARRLYFSVV*KCPLR----STNLP 338
           NPLF  RP++F IGQ IQP RDLSRFV+ P       RR   ++  K P         L 
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 339 RHWTRLQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXEMSLHQRGPTPSDPAQTSHQ 518
           ++      +  +++   T                      ++S   + P           
Sbjct: 84  KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVS---KKPYNVKYGLNHVV 140

Query: 519 AGREEEGALVV-IAHDVDPIELVLFLPAVCRKMGVPYCIVKGKSRLGALVHR 671
           A  E + A +V IA DVDPIELV+FLPA+C+KMGVPY IVK K+RLG ++H+
Sbjct: 141 ALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQ 192



 Score = 72.1 bits (169), Expect = 7e-14
 Identities = 33/56 (58%), Positives = 42/56 (75%)
 Frame = +2

Query: 236 LVQICKRPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 403
           L +  K P+YIR+QR++ +L  RLKVPP I QF +TLDK TA  +FK+L KYRPET
Sbjct: 46  LSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPET 101


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = +3

Query: 546 VVIAHDVDPIELVLFLPAVCRKMGVPYCIVKGKSRLG 656
           +V+A D +PIE++L LP +C    VPY  V  K+ LG
Sbjct: 51  IVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 284 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 385
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 268 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 357
           PHP      SA S ++P   P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +2

Query: 356 TAKGLFKILEKYR 394
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,588
Number of Sequences: 5004
Number of extensions: 43698
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)