Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0684
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 93 1e-19
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 82 5e-16
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 75 7e-14
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 37 0.013
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 37 0.013
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 35 0.068
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 34 0.090
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 31 0.84
09_04_0719 + 19716536-19716857,19716949-19717101,19717493-197177... 30 1.5
01_06_1486 - 37709159-37709377,37709558-37709821,37709903-377099... 28 5.9
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 7.8
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 93.5 bits (222), Expect = 1e-19
Identities = 57/168 (33%), Positives = 79/168 (47%), Gaps = 1/168 (0%)
Frame = +3
Query: 171 NPLFEKRPKNFAIGQGIQPTRDLSRFVRGPSISASSARRLYFSVV*KCPLRSTNLPRHWT 350
NPLFEKRPK F IG + P +DL RFV+ P + +R K P R
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 351 R-LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXEMSLHQRGPTPSDPAQTSHQAGR 527
+ L F + + + ++ +
Sbjct: 82 KNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQ 141
Query: 528 EEEGALVVIAHDVDPIELVLFLPAVCRKMGVPYCIVKGKSRLGALVHR 671
+ +V+ AHDVDPIELV++LPA+CRKM VPYCIVKGK+RLG++VH+
Sbjct: 142 SKAQLVVI-AHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHK 188
Score = 74.5 bits (175), Expect = 7e-14
Identities = 34/55 (61%), Positives = 43/55 (78%)
Frame = +2
Query: 236 LVQICKRPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 400
L + K PK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 44 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 98
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 81.8 bits (193), Expect = 5e-16
Identities = 34/48 (70%), Positives = 44/48 (91%)
Frame = +3
Query: 528 EEEGALVVIAHDVDPIELVLFLPAVCRKMGVPYCIVKGKSRLGALVHR 671
+ + LVVIAHDVDPIELV++LPA+CRKM +PYCIVKGK+RLG++VH+
Sbjct: 126 QSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHK 173
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/48 (52%), Positives = 36/48 (75%)
Frame = +2
Query: 257 PKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 400
PK +RIQRQ+ VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 52 PKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAE 99
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/30 (66%), Positives = 22/30 (73%)
Frame = +3
Query: 171 NPLFEKRPKNFAIGQGIQPTRDLSRFVRGP 260
NPLFEKRPK F IG + P +DL RFVR P
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWP 52
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 74.5 bits (175), Expect = 7e-14
Identities = 34/55 (61%), Positives = 43/55 (78%)
Frame = +2
Query: 236 LVQICKRPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 400
L + K PK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 28 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 82
Score = 60.9 bits (141), Expect = 9e-10
Identities = 43/151 (28%), Positives = 62/151 (41%), Gaps = 1/151 (0%)
Frame = +3
Query: 171 NPLFEKRPKNFAIGQGIQPTRDLSRFVRGPSISASSARRLYFSVV*KCPLRSTNLPRHWT 350
NPLFEKRPK F IG + P +DL RFV+ P + +R K P R
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65
Query: 351 R-LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXEMSLHQRGPTPSDPAQTSHQAGR 527
+ L F + + + ++ +
Sbjct: 66 KNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQ 125
Query: 528 EEEGALVVIAHDVDPIELVLFLPAVCRKMGV 620
+ +V+ AHDVDPIELV++LPA+CRKM +
Sbjct: 126 SKAQLVVI-AHDVDPIELVVWLPALCRKMEI 155
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 546 VVIAHDVDPIELVLFLPAVCRKMGVPYCIVKGKSRLG 656
VV+A D +P+E++L LP + VPY V K LG
Sbjct: 52 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 88
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 546 VVIAHDVDPIELVLFLPAVCRKMGVPYCIVKGKSRLG 656
VV+A D +P+E++L LP + VPY V K LG
Sbjct: 54 VVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 34.7 bits (76), Expect = 0.068
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 525 REEEGALVVIAHDVDPIELVLFLPAVCRKMGVPYCIVKGKSRL 653
R + L +IA ++ PI+++ +P +C + +PY V K L
Sbjct: 57 RRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDL 99
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 34.3 bits (75), Expect = 0.090
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 525 REEEGALVVIAHDVDPIELVLFLPAVCRKMGVPYCIVKGKSRL 653
R L VIA ++ PI+++ +P +C + +PY V K L
Sbjct: 57 RRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDL 99
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 268 PHPAPEGCTSASSESAPSDQP 330
P PAPE +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>09_04_0719 +
19716536-19716857,19716949-19717101,19717493-19717707,
19717785-19717855,19717998-19718157,19718598-19718790,
19718936-19719091,19719229-19719317,19719602-19719695,
19719870-19720039
Length = 540
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 284 SGAGCGYTWASYKSGQVTSWLNALTNSKVLWPLLEERIHDLLG 156
+GAG GY W S+++ +W A+ SK LW L + L G
Sbjct: 105 TGAGQGYLWMSHRTPGSDTWELAV-RSKQLWEELAAEVDGLGG 146
>01_06_1486 -
37709159-37709377,37709558-37709821,37709903-37709995,
37710387-37710581,37710665-37710763,37710884-37711132,
37711264-37711467,37711543-37711602,37711731-37711913,
37712382-37712999,37713101-37713169,37713275-37713853
Length = 943
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 477 RGPTPSDPAQTSHQAGREEEGALVVI 554
R PTP+ P QT+ + REEE +L +
Sbjct: 135 RSPTPAAPPQTASVSQREEEKSLASV 160
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -3
Query: 216 PDQ*QSSLASSRREDSRSSWAQPF*PPMGRR 124
P SSLA +RR +R AQP PP RR
Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,617,025
Number of Sequences: 37544
Number of extensions: 337833
Number of successful extensions: 1081
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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