Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0684
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   2e-16
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        80   2e-15
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        42   5e-04
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          37   0.013
SB_57389| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_57776| Best HMM Match : EB (HMM E-Value=2.9)                        28   7.9  
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 38/91 (41%), Positives = 55/91 (60%)
 Frame = +2

Query: 236 LVQICKRPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 415
           L +  + P+Y+++QRQK++L +RLKVPP INQFTQ LD+ +   LFK+L KYRPET    
Sbjct: 51  LSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPETKAEK 110

Query: 416 XXXXXXXXXXNVAKRDEPPPKRPNTIRSGTN 508
                         ++E P K+P  ++ G N
Sbjct: 111 KARLSAKAEKKAEGKEEAPGKKPMLVKYGIN 141



 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 34/47 (72%), Positives = 43/47 (91%)
 Frame = +3

Query: 531 EEGALVVIAHDVDPIELVLFLPAVCRKMGVPYCIVKGKSRLGALVHR 671
           ++  LVVIAHDVDPIE+V++LPA+CRKM VPYCIVKGK+RLG +VH+
Sbjct: 150 KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHK 196



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 23/30 (76%), Positives = 24/30 (80%)
 Frame = +3

Query: 171 NPLFEKRPKNFAIGQGIQPTRDLSRFVRGP 260
           NPL EKRP+NF IG  IQP RDLSRFVR P
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWP 58


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 34/47 (72%), Positives = 43/47 (91%)
 Frame = +3

Query: 531 EEGALVVIAHDVDPIELVLFLPAVCRKMGVPYCIVKGKSRLGALVHR 671
           ++  LVVIAHDVDPIE+V++LPA+CRKM VPYCIVKGK+RLG +VH+
Sbjct: 59  KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHK 105



 Score = 34.7 bits (76), Expect = 0.069
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 368 LFKILEKYRPETXXXXXXXXXXXXXXNVAKRDEPPPKRPNTIRSGTN 508
           LFK+L KYRPET                  ++E P K+P  ++ G N
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGIN 50


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 16/37 (43%), Positives = 25/37 (67%)
 Frame = +3

Query: 546 VVIAHDVDPIELVLFLPAVCRKMGVPYCIVKGKSRLG 656
           +V+A D +P+E++L LP +C    VPY  V+ K+ LG
Sbjct: 113 IVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALG 149


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 516 QAGREEEGALVVIAHDVDPIELVLFLPAVCRKMGVPYCIVKGK 644
           +A R+ E   V++A DV PI+++  +P +C    +PY  V  K
Sbjct: 108 KALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150


>SB_57389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 475 KEAQHHPIRHKPVTKLVEKKK 537
           KE +HH  RH P T+L+E +K
Sbjct: 8   KECKHHGNRHSPYTELLELRK 28


>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
          Length = 669

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 164 DRESSLREEAKELCYWSGH 220
           DR  ++ E  KE+CYW GH
Sbjct: 187 DRRKNMEERHKEMCYW-GH 204


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 292 TSASSESAPSDQPIYPDTG 348
           T+ASSE+APS  P  PD G
Sbjct: 43  TAASSEAAPSSAPSMPDYG 61


>SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 164 DRESSLREEAKELCYWSGH 220
           DR  ++ E  KE+CYW GH
Sbjct: 137 DRRKNMEERHKEMCYW-GH 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,292,468
Number of Sequences: 59808
Number of extensions: 349088
Number of successful extensions: 910
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)