Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0684
(671 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 91 9e-19
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 76 3e-14
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 75 3e-14
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 55 5e-08
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 43 2e-04
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 38 0.006
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.026
U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonin... 33 0.24
U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase ... 33 0.24
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 27 9.2
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 90.6 bits (215), Expect = 9e-19
Identities = 43/91 (47%), Positives = 55/91 (60%)
Frame = +2
Query: 236 LVQICKRPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 415
+ + K PKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 52 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAK 111
Query: 416 XXXXXXXXXXNVAKRDEPPPKRPNTIRSGTN 508
A + E KRPNT+R G N
Sbjct: 112 KNRLRARAEARAAGKKEEVTKRPNTVRHGVN 142
Score = 88.2 bits (209), Expect = 5e-18
Identities = 56/168 (33%), Positives = 75/168 (44%), Gaps = 1/168 (0%)
Frame = +3
Query: 171 NPLFEKRPKNFAIGQGIQPTRDLSRFVRGPSISASSARRLYFSVV*KCPLRSTNLPRHWT 350
NPLFEKR +NF IGQ IQP +D++RFV+ P + K P
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 351 RLQLR-AFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXEMSLHQRGPTPSDPAQTSHQAGR 527
R AF + + + +R T T +
Sbjct: 90 SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149
Query: 528 EEEGALVVIAHDVDPIELVLFLPAVCRKMGVPYCIVKGKSRLGALVHR 671
LV+IAHDV+P+E+VL LPA+CRK VPY I+KGK+ LG +V R
Sbjct: 150 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRR 197
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/56 (58%), Positives = 43/56 (76%)
Frame = +2
Query: 236 LVQICKRPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 403
+ + K PKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 52 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES 107
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +3
Query: 543 LVVIAHDVDPIELVLFLPAVCRKMGVPYCIVKGKSRLGALVHR 671
LV+IAHDV+P+E+VL LPA+CRK VPY I+KGK+ LG +V R
Sbjct: 135 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRR 177
Score = 48.4 bits (110), Expect = 5e-06
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = +3
Query: 171 NPLFEKRPKNFAIGQGIQPTRDLSRFVRGP 260
NPLFEKR +NF IGQ IQP +D++RFV+ P
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 59
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 75.4 bits (177), Expect = 3e-14
Identities = 33/56 (58%), Positives = 43/56 (76%)
Frame = +2
Query: 236 LVQICKRPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 403
+ + K PKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
Score = 48.4 bits (110), Expect = 5e-06
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = +3
Query: 171 NPLFEKRPKNFAIGQGIQPTRDLSRFVRGP 260
NPLFEKR +NF IGQ IQP +D++RFV+ P
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = +2
Query: 236 LVQICKRPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 349
+ + K PKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Score = 48.4 bits (110), Expect = 5e-06
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = +3
Query: 171 NPLFEKRPKNFAIGQGIQPTRDLSRFVRGP 260
NPLFEKR +NF IGQ IQP +D++RFV+ P
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +3
Query: 543 LVVIAHDVDPIELVLFLPAVCRKMGVPYCIVKGKSRLG 656
++V+A D +P+E++L LP +C VPY V+ K+ LG
Sbjct: 53 IIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 525 REEEGALVVIAHDVDPIELVLFLPAVCRKMGVPYCIVKGKSRLG-ALVHR 671
R E + ++A +V PI++ +P +C + +PY + + +LG A+ HR
Sbjct: 81 RRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHR 130
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -2
Query: 445 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 326
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonine
kinase protein.
Length = 982
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +3
Query: 483 PTPSDPAQTSHQAGREEEGALVVIAHDVDPIELVLFLPAVCRKMGVPYCIVK 638
P+PS+P TS + E +++ AHD DP++ + P + + +P+ VK
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAPV--KDLHMPHRAVK 501
>U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase
protein 18, isoforma protein.
Length = 982
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +3
Query: 483 PTPSDPAQTSHQAGREEEGALVVIAHDVDPIELVLFLPAVCRKMGVPYCIVK 638
P+PS+P TS + E +++ AHD DP++ + P + + +P+ VK
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAPV--KDLHMPHRAVK 501
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 318 LRSTNLPRHWTRLQLRA 368
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +1
Query: 253 EAQVYPHPAPE--GCTSASSESAPSDQPIYP 339
+ Q YP P P+ GCT + + P QP P
Sbjct: 159 QQQQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +1
Query: 253 EAQVYPHPAPE--GCTSASSESAPSDQPIYP 339
+ Q YP P P+ GCT + + P QP P
Sbjct: 159 QQQQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +1
Query: 253 EAQVYPHPAPE--GCTSASSESAPSDQPIYP 339
+ Q YP P P+ GCT + + P QP P
Sbjct: 159 QQQQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,075,513
Number of Sequences: 27780
Number of extensions: 257410
Number of successful extensions: 750
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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