Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0684
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   6.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.1  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 593 QEENQLNRINIMSDDHKCAFFFSTSLVTGLCR 498
           ++E  L+ + ++S+D    FF +T +    CR
Sbjct: 438 EDETPLDPVVVISNDKSTEFFLATVVEEAACR 469


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 632 NAVWYTHFTAYRWQEENQLNRINIMSDD 549
           +AV YTH+       +N L  I+ + DD
Sbjct: 166 SAVRYTHYIGTLATNDNILESISYVKDD 193


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 621 VHPFYGIPLA 592
           VH FYGIP A
Sbjct: 59  VHVFYGIPFA 68


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 621 VHPFYGIPLA 592
           VH FYGIP A
Sbjct: 59  VHVFYGIPFA 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,774
Number of Sequences: 438
Number of extensions: 3043
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)