Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0684
(671 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 84 9e-17
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 84 9e-17
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 39 0.003
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 37 0.011
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 37 0.011
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 37 0.011
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 37 0.014
At3g55580.1 68416.m06171 regulator of chromosome condensation (R... 28 4.9
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 28 6.5
At3g09210.1 68416.m01095 KOW domain-containing transcription fac... 28 6.5
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 83.8 bits (198), Expect = 9e-17
Identities = 37/48 (77%), Positives = 44/48 (91%)
Frame = +3
Query: 528 EEEGALVVIAHDVDPIELVLFLPAVCRKMGVPYCIVKGKSRLGALVHR 671
+ + LVVIAHDVDPIELV++LPA+CRKM VPYCIVKGKSRLGA+VH+
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQ 186
Score = 76.2 bits (179), Expect = 2e-14
Identities = 36/55 (65%), Positives = 43/55 (78%)
Frame = +2
Query: 236 LVQICKRPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 400
L + K PK IR+QRQK +L++RLKVPP +NQFT+TLDK A LFKIL KYRPE
Sbjct: 42 LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE 96
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +3
Query: 171 NPLFEKRPKNFAIGQGIQPTRDLSRFVRGP-SISASSARRL 290
NPLFE+RPK F IG + P +DLSR+++ P SI +R+
Sbjct: 20 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 60
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 83.8 bits (198), Expect = 9e-17
Identities = 37/48 (77%), Positives = 44/48 (91%)
Frame = +3
Query: 528 EEEGALVVIAHDVDPIELVLFLPAVCRKMGVPYCIVKGKSRLGALVHR 671
+ + LVVIAHDVDPIELV++LPA+CRKM VPYCIVKGKSRLGA+VH+
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQ 187
Score = 75.8 bits (178), Expect = 2e-14
Identities = 35/55 (63%), Positives = 43/55 (78%)
Frame = +2
Query: 236 LVQICKRPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 400
L + K PK IR+QRQK +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 43 LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE 97
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +3
Query: 171 NPLFEKRPKNFAIGQGIQPTRDLSRFVRGP-SISASSARRL 290
NPLFE+RPK F IG + P +DLSR+++ P SI +R+
Sbjct: 21 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 61
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 525 REEEGALVVIAHDVDPIELVLFLPAVCRKMGVPYCIVKGKSRL 653
R + L VIA ++ PI+++ LP +C + GVPY V K L
Sbjct: 63 RRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDL 105
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 546 VVIAHDVDPIELVLFLPAVCRKMGVPYCIVKGKSRLG 656
VV+A D +P+E++L LP + VPY V K LG
Sbjct: 86 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 122
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 546 VVIAHDVDPIELVLFLPAVCRKMGVPYCIVKGKSRLG 656
VV+A D +P+E++L LP + VPY V K LG
Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 546 VVIAHDVDPIELVLFLPAVCRKMGVPYCIVKGKSRLG 656
VV+A D +P+E++L LP + VPY V K LG
Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 546 VVIAHDVDPIELVLFLPAVCRKMGVPYCIVKGKSRLG 656
+V+A D +P+E++L LP + VPY V K LG
Sbjct: 54 IVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>At3g55580.1 68416.m06171 regulator of chromosome condensation
(RCC1) family protein UVB-resistance protein UVR8,
Arabidopsis thaliana, EMBL:AF130441; contains Pfam
PF00415: Regulator of chromosome condensation (RCC1)
domain
Length = 488
Score = 28.3 bits (60), Expect = 4.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 284 SGAGCGYTWASYKSGQVTSW 225
SG GCG+ A+ +SG++ +W
Sbjct: 69 SGGGCGFAMATAESGKLITW 88
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 427 QPLFPGCFSLRPVFLQNLEKALSCSLVQCL 338
QP P CF L P L LE + +CS++ +
Sbjct: 992 QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
family protein ; est match
Length = 333
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 457 LGNVSFSSFPQPLFPGCFSLRPVFLQNLEKAL 362
L N S S P+P+FPGC +R + + + ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,486,973
Number of Sequences: 28952
Number of extensions: 247297
Number of successful extensions: 751
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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