Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0682
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    76   6e-15
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    26   4.8  
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p...    25   8.3  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    25   8.3  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 75.8 bits (178), Expect = 6e-15
 Identities = 38/74 (51%), Positives = 46/74 (62%)
 Frame = +1

Query: 262 LGFVFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFT 441
           +GF+ LFT+GGLTGVIL+NS +DI  HDTY+VVAHFHYVLS               P   
Sbjct: 349 IGFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMF 407

Query: 442 GLSLNSYILKIQFF 483
           GL  N  +  IQF+
Sbjct: 408 GLMYNETLASIQFW 421



 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 32/56 (57%), Positives = 46/56 (82%), Gaps = 2/56 (3%)
 Frame = +2

Query: 95  IV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYN--PNIY 256
           +V +HH+FTVG+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++  P +Y
Sbjct: 292 MVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLY 347



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +3

Query: 510 FFPQHFLGLAGIPRRYSDYPD 572
           F PQHFLGL G+PRR  DYP+
Sbjct: 431 FGPQHFLGLNGMPRRIPDYPE 451


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 438 YRPFIKFLYTKNSIFYNIYWSKYKFFPQHFLGL 536
           +RPF KFL  K  IF + YW +      ++LGL
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGL 232


>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 588 FMKYMSLDNLNIVEVFQLNLKNVVEKIYIYSNKYC 484
           +++  + +N  + EVFQL +   ++K + +S K C
Sbjct: 166 YVECSAKENTGVNEVFQLAVGLTIKKSFSFSKKSC 200


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 582 KYMSLDNLNIVEVFQLNLKNVVEKIYIYSNKYCK 481
           ++ SLDNL   ++FQLN   V E    Y  K C+
Sbjct: 768 RHFSLDNLR--QLFQLNDHTVCETHETYKCKRCR 799


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,896,402
Number of Sequences: 5004
Number of extensions: 29372
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)