Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0682
(726 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 85 4e-17
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_27727| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-08) 28 8.9
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 85.4 bits (202), Expect = 4e-17
Identities = 41/74 (55%), Positives = 48/74 (64%)
Frame = +1
Query: 262 LGFVFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFT 441
+GFVFLFT+GGLTGVILANSS+D+ +HDTYYVVAHFHYVLS + T
Sbjct: 46 IGFVFLFTIGGLTGVILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKIT 105
Query: 442 GLSLNSYILKIQFF 483
G N KI F+
Sbjct: 106 GYCYNELYGKIHFW 119
Score = 54.4 bits (125), Expect = 9e-08
Identities = 24/36 (66%), Positives = 32/36 (88%)
Frame = +2
Query: 128 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQI 235
+++DTRAYFT+AT+IIAVPTGIK+F LAT++G I
Sbjct: 1 MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAI 36
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/38 (55%), Positives = 23/38 (60%)
Frame = +3
Query: 459 LYTKNSIFYNIYWSKYKFFPQHFLGLAGIPRRYSDYPD 572
LY K + FFPQHFLGLAG PRRYSD+ D
Sbjct: 112 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFAD 149
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/38 (55%), Positives = 23/38 (60%)
Frame = +3
Query: 459 LYTKNSIFYNIYWSKYKFFPQHFLGLAGIPRRYSDYPD 572
LY K + FFPQHFLGLAG PRRYSD+ D
Sbjct: 26 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFAD 63
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.025
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 522 HFLGLAGIPRRYSDYPD 572
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 36.3 bits (80), Expect = 0.025
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 522 HFLGLAGIPRRYSDYPD 572
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.025
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 522 HFLGLAGIPRRYSDYPD 572
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.025
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 522 HFLGLAGIPRRYSDYPD 572
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.025
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 522 HFLGLAGIPRRYSDYPD 572
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.025
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 522 HFLGLAGIPRRYSDYPD 572
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 107 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNI 253
HH+ T+ I + T+I PT I + + +H T IN +P +
Sbjct: 14 HHLHTIIIHLHPTVIHLHPTVIFLHPTVIHLHPTVLNLHPTIINLHPTV 62
>SB_27727| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-08)
Length = 353
Score = 27.9 bits (59), Expect = 8.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 240 ITLIFMKIRFCIFIHSRRINRC 305
+TL+ M IR +F+H +R+ C
Sbjct: 206 LTLVVMSIRILMFLHRKRLQSC 227
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,517,378
Number of Sequences: 59808
Number of extensions: 178581
Number of successful extensions: 394
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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