Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0682
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016441-1|AAB65911.3|  383|Caenorhabditis elegans Hypothetical ...    29   2.6  
U80027-15|AAC48116.2|  194|Caenorhabditis elegans Hypothetical p...    29   4.5  
Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AF016441-1|AAB65911.3|  383|Caenorhabditis elegans Hypothetical
           protein M03F8.4 protein.
          Length = 383

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 567 DNLNIVEVFQLNLKNVVEKIYIYSNK 490
           D   IVE  +LN    +EKIYIY+N+
Sbjct: 161 DAKRIVEFIELNTLQGIEKIYIYTNQ 186


>U80027-15|AAC48116.2|  194|Caenorhabditis elegans Hypothetical
           protein T28A11.5 protein.
          Length = 194

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 615 YMNLMKKLYFMKYMSLDNLNIVEVFQLNLKNVVEKIYIYSNK 490
           Y+N M K+YF+   S D++N  +   L + +  E     +NK
Sbjct: 49  YVNFMAKMYFLDVKSQDSMNKFKTSCLFMADCTESFECQNNK 90


>Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical
           protein T06G6.2 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 4   SYYFTRKRKKRNFWLFRNNLCYTSNWVIRIYCLSSSYIH 120
           SYYF R    R  W  +NN+   S  +I + CL +S IH
Sbjct: 42  SYYFARLAI-RTLW--KNNIFSNSTRLILLVCLLNSIIH 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,012,069
Number of Sequences: 27780
Number of extensions: 153410
Number of successful extensions: 335
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)