Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0681
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.4  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    22   5.5  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   5.5  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   7.2  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   7.2  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +2

Query: 269 QPLSTWYLPSLYV*SPS---RNSHPSVVLLSVT 358
           Q  ++W+ PS+Y  SP    R+ +PS + +S +
Sbjct: 183 QVAASWHTPSMYPLSPGAGFRSPYPSALPISTS 215


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +2

Query: 269 QPLSTWYLPSLYV*SPS---RNSHPSVVLLSVT 358
           Q  ++W+ PS+Y  SP    R+ +PS + +S +
Sbjct: 75  QVAASWHTPSMYPLSPGAGFRSPYPSALPISTS 107


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 326 NSWKDSTHRGLEGTKLTMAASPDLWIL 246
           +SW +    GLE      + +PDL +L
Sbjct: 73  DSWNEIDLHGLENVANLKSVNPDLKVL 99


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 304 IEAWKVPS*QWLHLQTCGFWVDFSR 230
           IE WKV   Q ++L+    +VD  R
Sbjct: 472 IEGWKVEKIQEIYLEALRAYVDNRR 496


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 485 NFSYNCDTHSPKGVSKEKRATNSF 556
           N S+  +   PKG S  KRA  ++
Sbjct: 69  NRSHEPEMERPKGASNGKRARTAY 92


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 485 NFSYNCDTHSPKGVSKEKRATNSF 556
           N S+  +   PKG S  KRA  ++
Sbjct: 89  NRSHEPEMERPKGASNGKRARTAY 112


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,349
Number of Sequences: 336
Number of extensions: 3426
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)