Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0681
(693 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 136 1e-32
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 39 0.003
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 36 0.041
SB_20513| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 2.7
SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9) 29 3.6
SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_46422| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 28 6.2
SB_11339| Best HMM Match : TGF_beta (HMM E-Value=5.60519e-45) 28 6.2
SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014) 28 6.2
SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 28 8.3
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 28 8.3
SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) 28 8.3
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 28 8.3
SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) 28 8.3
SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29) 28 8.3
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 136 bits (330), Expect = 1e-32
Identities = 60/83 (72%), Positives = 70/83 (84%)
Frame = +2
Query: 2 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 181
FNVKNVSVK+++RG VAGD KNNPPK FTAQVIV+NHPG+I GY+PVLDCHTAHIA
Sbjct: 169 FNVKNVSVKDIKRGNVAGDFKNNPPKPCKSFTAQVIVMNHPGEIHAGYSPVLDCHTAHIA 228
Query: 182 CKFAEIKEKVDRRTGKSTEVNPK 250
CKF ++ EK+DRR+GK E NPK
Sbjct: 229 CKFDKLLEKIDRRSGKKLEDNPK 251
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/52 (75%), Positives = 49/52 (94%)
Frame = +1
Query: 244 PKIHKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 399
PK+ K+GDAA+V ++PSKP+CVE+F EFPPLGRFAVRDM+QTVAVGVIK+V+
Sbjct: 250 PKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRFAVRDMKQTVAVGVIKSVD 301
>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
Length = 80
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 271 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 387
A V L S+P+CVE ++++ LGRF +R T+A GVI
Sbjct: 40 AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 35.5 bits (78), Expect = 0.041
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 238 SQPKIHKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 357
++P+ K AI L +C+E F +F +GRF +RD
Sbjct: 506 TRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545
>SB_20513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 32.3 bits (70), Expect = 0.38
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 191 AEIKEKVDRRTGKSTEVNPKSTSLEMQPLSTWY 289
+ + EKVDR+ ST NP SL+ +P+ WY
Sbjct: 23 SSVAEKVDRKL-PSTHYNPTWNSLDKRPIPAWY 54
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 246 GLTSVDLPVRRSTFSL-ISANLQAMWAVWQSK 154
G+T++ LP ST + NLQ W +WQSK
Sbjct: 2463 GITTIPLPSSSSTPIIDFEVNLQGEWILWQSK 2494
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 277 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 366
+++VP++P CV SF EF + +RD+ Q
Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409
>SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2
Query: 635 FQIYYV*PYINYKIMLHYKPCKKYRKGMSL*PFFPS 528
+QI+Y+ Y KI +H++ K RK + L FFPS
Sbjct: 308 YQIFYILEYTG-KISIHWRYLKITRKYLLLLAFFPS 342
>SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)
Length = 495
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 398 LTALMTPTATVCLMSRTAKRPRGGNSWKDSTHR 300
LT+L PT L RT +PR G W+ + H+
Sbjct: 409 LTSLNEPTGEDLLFGRTLWKPRFGYLWQSAIHQ 441
>SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 479 QHNFSYNCDTHSPKGVSKEKRA--TNSFLFYIFYKACNVTLFYNLYKVIHNISETFCYDC 652
+H N +T SP+ + +A T + + IF + L +++Y+++H + C D
Sbjct: 429 RHRRQINTNTVSPQPPRQVDKAAVTVAMVILIFLSSWIPILCFSVYELVHTSRVSVCKDL 488
Query: 653 KLKCKF 670
+ + +F
Sbjct: 489 RFRLRF 494
>SB_46422| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 463
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 270 CISRLVDFGLTSVDLPVRRSTFSLISANLQAMWAVWQSK 154
C+ RL+ F +T+ D P F L A + +W +W+ K
Sbjct: 382 CVGRLMHFHVTASDTP----EFPLHHAFIDKIWDMWEKK 416
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 383 TPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 288
TP+ VCL+SR + PR W R + G
Sbjct: 282 TPSLYVCLLSRAHRDPRLSTGWSPYEKREVRG 313
>SB_11339| Best HMM Match : TGF_beta (HMM E-Value=5.60519e-45)
Length = 481
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -2
Query: 611 YINYKIMLHYKPCKKYRKGMSL*PFFPSKHLSVNEYRSCMKNCAVNSSSY 462
Y NYK M+ + C+K K L P + VN R C +NSS+Y
Sbjct: 338 YKNYKDMVVERSCEKAAKTSCLISIEPFSNHDVNRGR---VRCTLNSSNY 384
>SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014)
Length = 406
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 270 CISRLVDFGLTSVDLPVRRSTFSLISANLQAMWAVWQSK 154
C+ RL+ F +T+ D P F L A + +W +W+ K
Sbjct: 325 CVGRLMHFHVTASDTP----EFPLHHAFIDKIWDMWEKK 359
>SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 904
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 277 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 366
++++P++P CV SF EF + +RD+ Q
Sbjct: 381 MSVMPAQPQCVASFPEFCAVSVSYIRDLLQ 410
>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
Length = 1175
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 277 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 366
+++ P++P CV SF EF + +RD+ Q
Sbjct: 385 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 414
>SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)
Length = 549
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 277 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 366
+++ P++P CV SF EF + +RD+ Q
Sbjct: 389 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 418
>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 1131
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 277 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 366
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1044 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1073
>SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 277 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 366
+++ P++P CV SF EF + +RD+ Q
Sbjct: 532 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 561
>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
Length = 1285
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 277 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 366
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1111 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1140
>SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)
Length = 605
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 277 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 366
+++ P++P CV SF EF + +RD+ Q
Sbjct: 184 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 213
>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 277 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 366
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 277 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 366
+++ P++P CV SF EF + +RD+ Q
Sbjct: 87 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 116
>SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 277 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 366
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 277 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 366
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,211,837
Number of Sequences: 59808
Number of extensions: 435928
Number of successful extensions: 1238
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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