Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0681
(693 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 138 5e-33
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 138 5e-33
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 138 5e-33
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 31 0.78
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 31 0.78
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 29 3.2
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 3.2
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 5.5
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 5.5
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 5.5
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 27 9.6
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 138 bits (333), Expect = 5e-33
Identities = 63/83 (75%), Positives = 69/83 (83%)
Frame = +2
Query: 2 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 181
FNVKNVSVK++RRG V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIA
Sbjct: 276 FNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIA 335
Query: 182 CKFAEIKEKVDRRTGKSTEVNPK 250
CKF E+KEKVDRRTGK E PK
Sbjct: 336 CKFNELKEKVDRRTGKKVEDFPK 358
Score = 87.4 bits (207), Expect = 9e-18
Identities = 40/51 (78%), Positives = 45/51 (88%)
Frame = +1
Query: 244 PKIHKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 396
PK KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 357 PKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 138 bits (333), Expect = 5e-33
Identities = 63/83 (75%), Positives = 69/83 (83%)
Frame = +2
Query: 2 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 181
FNVKNVSVK++RRG V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIA
Sbjct: 310 FNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIA 369
Query: 182 CKFAEIKEKVDRRTGKSTEVNPK 250
CKF E+KEKVDRRTGK E PK
Sbjct: 370 CKFNELKEKVDRRTGKKVEDFPK 392
Score = 87.4 bits (207), Expect = 9e-18
Identities = 40/51 (78%), Positives = 45/51 (88%)
Frame = +1
Query: 244 PKIHKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 396
PK KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 391 PKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 138 bits (333), Expect = 5e-33
Identities = 63/83 (75%), Positives = 69/83 (83%)
Frame = +2
Query: 2 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 181
FNVKNVSVK++RRG V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIA
Sbjct: 310 FNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIA 369
Query: 182 CKFAEIKEKVDRRTGKSTEVNPK 250
CKF E+KEKVDRRTGK E PK
Sbjct: 370 CKFNELKEKVDRRTGKKVEDFPK 392
Score = 87.4 bits (207), Expect = 9e-18
Identities = 40/51 (78%), Positives = 45/51 (88%)
Frame = +1
Query: 244 PKIHKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 396
PK KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 391 PKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 247 KIHKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAV 396
K K + I+ L +P +E F+E+P LGRF +RD +T+A+G V+K V
Sbjct: 481 KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVV 531
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/76 (28%), Positives = 40/76 (52%)
Frame = +2
Query: 2 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 181
F +K + EL+ G++ S ++ K F A+V+VL H I++GY+ VL +A
Sbjct: 402 FKLKGIEENELQGGFIIC-SPDSLAKTGRVFDAEVLVLEHRSIIASGYSCVLHIQSAVEE 460
Query: 182 CKFAEIKEKVDRRTGK 229
+ +D++TG+
Sbjct: 461 VTVKGVIATIDKKTGE 476
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 31.1 bits (67), Expect = 0.78
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 244 PKIHKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 396
P+ G +A+V + + +E+F LGR R T+A G+++ V
Sbjct: 538 PRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 31.1 bits (67), Expect = 0.78
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 244 PKIHKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 396
P+ G +A+V + + +E+F LGR R T+A G+++ V
Sbjct: 556 PRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 606
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -2
Query: 458 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 306
+P+V + L PPP L +LM P TV + R K P G NS K T
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNSKKIKT 177
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +2
Query: 536 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 643
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 155 LDCHTAHIACKFAEIKEKVDRRTGKSTE 238
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 155 LDCHTAHIACKFAEIKEKVDRRTGKSTE 238
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 155 LDCHTAHIACKFAEIKEKVDRRTGKSTE 238
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = -2
Query: 506 YRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 357
Y +C ++N Y L ++A+V LPPP ++ + ++ A C++
Sbjct: 190 YNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,657,248
Number of Sequences: 27780
Number of extensions: 328101
Number of successful extensions: 896
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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