Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0679
         (557 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4XPH9 Cluster: Putative uncharacterized protein; n=3; ...    35   1.1  

>UniRef50_Q4XPH9 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 1388

 Score = 35.1 bits (77), Expect = 1.1
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = -1

Query: 284 LNM-KTFKLNTLRSF*KFKLKY*IH*KNRKIKILNNQYIAVFNLF*IILIPKKSYVKPSN 108
           LNM  TFKL+ LRS+ K+  K     K     I+N + I   ++F I+++P  SY+K   
Sbjct: 559 LNMISTFKLDELRSYKKYFEKII---KKEINNIINIKKIKRMDVFEILVVPSDSYIKFQK 615

Query: 107 YYSNV 93
             SNV
Sbjct: 616 VLSNV 620


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 399,202,532
Number of Sequences: 1657284
Number of extensions: 6156449
Number of successful extensions: 10625
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 10312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10622
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37071859483
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)