Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0679
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   0.91 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   0.91 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   0.91 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.8  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 516 RIQLYYFLHENMFT 475
           R QLYYFLH+ + T
Sbjct: 257 RGQLYYFLHKQLMT 270


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 516 RIQLYYFLHENMFT 475
           R QLYYFLH+ + T
Sbjct: 257 RGQLYYFLHKQLMT 270


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 6   YNIFE*INDCIKCLKMLDHYNINRISFV 89
           YN +E I++ I C  +L+ +  NR+  +
Sbjct: 272 YNTWEPISNLINCSDILEEFERNRLQLL 299


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 250 DHFENSNLNIKYIKKIERLKF*IINILQ 167
           +++ N+N N  Y    ++L + IINI Q
Sbjct: 336 NNYNNNNYNNNYNNNCKKLYYNIINIEQ 363


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 288 GHCHVIILSNVYM 326
           GH H II+ NVY+
Sbjct: 128 GHFHNIIMPNVYI 140


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 288 GHCHVIILSNVYM 326
           GH H II+ NVY+
Sbjct: 128 GHFHNIIMPNVYI 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,369
Number of Sequences: 438
Number of extensions: 2090
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)