Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0678
         (531 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    24   0.73 
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    24   0.96 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   5.1  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   8.9  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   8.9  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   8.9  

>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 24.2 bits (50), Expect = 0.73
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 232 KWRLHPRSVSVGDKVLLPEY 291
           KW   P SV V ++V LP++
Sbjct: 16  KWNEGPNSVGVSNEVSLPQF 35


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 23.8 bits (49), Expect = 0.96
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 232 KWRLHPRSVSVGDKVLLPEY 291
           KW   P SV V  +V LP++
Sbjct: 198 KWNEGPNSVGVSSEVSLPQF 217


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 101 EEEPIVLLHWPFRFL 57
           EE P V +  PFRFL
Sbjct: 485 EERPDVKIFLPFRFL 499


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 67  NGQCSKTIGSSSGPCPDQKS*SYNQNCRRHCHPREGSIQG 186
           +GQ  +T+G +S   P + + SY +        RE   QG
Sbjct: 711 HGQWERTVGHNSPLFPLESATSYQKKLTVDFSAREWVKQG 750


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +1

Query: 217 WSPKRKWRLHPRSVSVGD 270
           W P+R+W   P + +  D
Sbjct: 119 WCPRREWSSPPDARAASD 136


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +1

Query: 217 WSPKRKWRLHPRSVSVGD 270
           W P+R+W   P + +  D
Sbjct: 275 WCPRREWSSPPDARAASD 292


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,616
Number of Sequences: 336
Number of extensions: 2500
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12887571
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)