Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0678
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1454 + 26652397-26652501,26653014-26653156,26654013-26654061 58 4e-09
06_01_0676 + 4945361-4945531,4945632-4945811,4947145-4947300,494... 56 1e-08
02_05_0964 - 33133516-33133689,33133780-33133857,33133997-331341... 56 1e-08
09_04_0259 - 16182190-16182360,16183185-16183262,16184431-161845... 56 2e-08
03_03_0057 - 14132854-14133012,14133724-14133837,14134306-14134413 40 0.002
10_08_0968 + 21933627-21933785,21933893-21933943,21934094-219341... 31 0.44
04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235 30 1.3
12_01_0618 - 5099021-5099668,5099701-5100221,5100311-5100352,510... 29 2.3
11_05_0098 + 19041790-19041894,19042363-19043274,19043605-19043868 27 7.1
05_04_0335 - 20354678-20354686,20354819-20355662,20355739-20356217 27 7.1
01_05_0283 - 20354065-20354154,20354579-20354890,20355566-203557... 27 7.1
11_06_0631 - 25656885-25657000,25658591-25658658,25658957-256589... 27 9.4
08_02_0041 + 11531010-11531366,11531409-11531657 27 9.4
07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083... 27 9.4
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 27 9.4
>07_03_1454 + 26652397-26652501,26653014-26653156,26654013-26654061
Length = 98
Score = 58.0 bits (134), Expect = 4e-09
Identities = 28/59 (47%), Positives = 44/59 (74%)
Frame = +2
Query: 83 KRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQL 259
+RL+P L+RVL+++ K+AGGI++PE ++ ++ G+VVAVGPG R ++G IPV L
Sbjct: 3 RRLIPSLNRVLVEKLVQPKKSAGGILLPETSK-QLNSGKVVAVGPGERDKDGKLIPVAL 60
Score = 47.6 bits (108), Expect = 6e-06
Identities = 25/44 (56%), Positives = 30/44 (68%)
Frame = +1
Query: 238 RLHPRSVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 369
+L P ++ GD VLLPEYGG +V L EKEY LFRE DIL +
Sbjct: 54 KLIPVALKEGDTVLLPEYGGLEVKLA-AEKEYLLFREHDILGTL 96
>06_01_0676 +
4945361-4945531,4945632-4945811,4947145-4947300,
4947460-4947537,4964041-4964214
Length = 252
Score = 56.4 bits (130), Expect = 1e-08
Identities = 30/60 (50%), Positives = 38/60 (63%)
Frame = +2
Query: 80 VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQL 259
VK + PL DRVLIK AEA KTAGG+++ E + K G VVAVGPG + G P+ +
Sbjct: 156 VKDMKPLNDRVLIKVAEAEDKTAGGLILTETTKEKPSIGTVVAVGPGPLDDEGKRQPLSV 215
Score = 51.6 bits (118), Expect = 4e-07
Identities = 27/44 (61%), Positives = 30/44 (68%)
Frame = +2
Query: 89 LVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPG 220
L PL DRVL+K A KT GGI++P AQSK GEVVAVG G
Sbjct: 61 LKPLGDRVLVKLGAAEEKTVGGILLPSTAQSKPQGGEVVAVGEG 104
>02_05_0964 -
33133516-33133689,33133780-33133857,33133997-33134152,
33134685-33134864,33135516-33135695
Length = 255
Score = 56.4 bits (130), Expect = 1e-08
Identities = 30/59 (50%), Positives = 37/59 (62%)
Frame = +2
Query: 83 KRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQL 259
K + PL DRVLIK AEA KT GG+++ E + K G VVAVGPG E G IP+ +
Sbjct: 160 KDMKPLSDRVLIKVAEAEDKTPGGLLLTETTKEKPSIGTVVAVGPGPLDEEGKRIPLSV 218
Score = 52.0 bits (119), Expect = 3e-07
Identities = 26/44 (59%), Positives = 30/44 (68%)
Frame = +2
Query: 89 LVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPG 220
L PL DRVL+K A KT GGI++P AQSK GEVVA+G G
Sbjct: 64 LKPLADRVLVKIKSAEQKTTGGILLPSAAQSKPQGGEVVAIGEG 107
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 247 PRSVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 363
P SVS G VL +Y G++ +D Y + R SD++A
Sbjct: 215 PLSVSAGSTVLYSKYAGSEFK-GSDGTSYIVLRVSDLMA 252
>09_04_0259 -
16182190-16182360,16183185-16183262,16184431-16184586,
16184913-16185092,16185875-16186027
Length = 245
Score = 55.6 bits (128), Expect = 2e-08
Identities = 30/60 (50%), Positives = 38/60 (63%)
Frame = +2
Query: 80 VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQL 259
VK L PL DRVLIK AEA KTAGG+++ + + K G V AVGPG E+G P+ +
Sbjct: 150 VKDLKPLNDRVLIKVAEAEEKTAGGLLLTQATKEKPSIGTVTAVGPGPLVEDGSRKPLSI 209
Score = 47.2 bits (107), Expect = 8e-06
Identities = 26/55 (47%), Positives = 33/55 (60%)
Frame = +2
Query: 95 PLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQL 259
PL DRVL+K + KT GGI++P QSK G+VVAVG G R D I + +
Sbjct: 57 PLGDRVLVKIKTSDDKTVGGILLPTSVQSKPQGGQVVAVGEG-RSMGSDSIEISV 110
>03_03_0057 - 14132854-14133012,14133724-14133837,14134306-14134413
Length = 126
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/35 (60%), Positives = 24/35 (68%)
Frame = +1
Query: 229 RKWRLHPRSVSVGDKVLLPEYGGTKVSLENDEKEY 333
R +L P S+ GD VLLPEYGGT+V L EKEY
Sbjct: 90 RDGKLIPVSLKEGDTVLLPEYGGTEVKLA--EKEY 122
Score = 35.5 bits (78), Expect = 0.027
Identities = 14/31 (45%), Positives = 24/31 (77%)
Frame = +2
Query: 77 AVKRLVPLLDRVLIKRAEAITKTAGGIVIPE 169
A +RL+P ++RVL+++ K+AGGI++PE
Sbjct: 2 AARRLIPSMNRVLVEKLLQPNKSAGGILLPE 32
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 197 EVVAVGPGARKENGDFIPVQL 259
+VVAVGPG R +G IPV L
Sbjct: 79 KVVAVGPGERDRDGKLIPVSL 99
>10_08_0968 +
21933627-21933785,21933893-21933943,21934094-21934129,
21935011-21935076,21935163-21935210,21936424-21936453,
21936651-21936719
Length = 152
Score = 31.5 bits (68), Expect = 0.44
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 256 VSVGDKVLLPEYGGTKVSLENDEKEYHLF-RESDILAKIE 372
V G KVL + +V L DEK H F RESD+LA +E
Sbjct: 115 VEAGKKVLFSDINAYEVDLGTDEK--HCFCRESDLLAVVE 152
>04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235
Length = 416
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +1
Query: 148 RRHCHPREGSIQGFTRRSSSGRSWSPKRKWRLHPRSVSVGDKVLLPEYGGTKVSLENDE 324
RR P +G G RR+ + +S + K K ++ +GD GG +S + D+
Sbjct: 257 RRKSKPSDGEHSGEKRRAQANKSAATKDKAGSSSKNAGIGDGFETQLLGGAHMSKDQDQ 315
>12_01_0618 -
5099021-5099668,5099701-5100221,5100311-5100352,
5100905-5100962
Length = 422
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +1
Query: 58 KNRNGQCSKTIGSSSGPCP 114
K++N +C KT+ SSSGPCP
Sbjct: 236 KDKN-ECLKTMRSSSGPCP 253
>11_05_0098 + 19041790-19041894,19042363-19043274,19043605-19043868
Length = 426
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 175 SIQGFTRRSSSGRSWSPKRKWRLHPRSVSVGDKVL 279
S + R S R W KR WR +P+ V GD +L
Sbjct: 46 SFKEAARTSVVSRKW--KRLWRCYPKLVLTGDMML 78
>05_04_0335 - 20354678-20354686,20354819-20355662,20355739-20356217
Length = 443
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 280 LPEYGGTKVSLENDEKEYHLFRESDILA 363
+P+ LE +EKE+HLF S+ LA
Sbjct: 393 VPDTSSVMHDLEENEKEHHLFLHSERLA 420
>01_05_0283 -
20354065-20354154,20354579-20354890,20355566-20355763,
20356371-20356754,20357445-20357858,20359771-20360022
Length = 549
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = -2
Query: 506 KCKYCN*DKINTSQKIHDHINVSFAHATTKLTELESHVKA 387
+C+YC D + ++H H+ F H E KA
Sbjct: 443 RCRYCGLDGYGKTSRLHFHLAAVFRHPKCPSVPKEVFAKA 482
>11_06_0631 -
25656885-25657000,25658591-25658658,25658957-25658996,
25659742-25659820,25659918-25661707,25662030-25662037,
25662305-25662367,25662504-25662820
Length = 826
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 280 LPEYGGTKVSLENDEKEYHLFRESDILA 363
+P+ LE EKE+HLF S+ LA
Sbjct: 678 VPDTSSVMHDLEESEKEHHLFLHSERLA 705
>08_02_0041 + 11531010-11531366,11531409-11531657
Length = 201
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 139 QNCRRHCHPREGSIQG 186
+N RRH HPR G++ G
Sbjct: 117 RNMRRHVHPRRGAVLG 132
>07_03_1584 +
27907345-27907357,27907693-27908039,27908202-27908319,
27908653-27908705,27908808-27908978,27909447-27909643,
27909729-27909807,27909954-27909992,27910202-27910321,
27910417-27910518,27910654-27910737,27910832-27911074,
27911156-27911281,27911365-27911439,27911534-27911605,
27911807-27911926,27912075-27912172,27912643-27912802,
27912867-27912980,27913029-27913121,27913122-27913319,
27913404-27913497,27914032-27914192
Length = 958
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -3
Query: 115 QDTVQKRNQSFYCIGHFDF*LTEFKSEEYEHDERCS 8
Q+T++++ SF+ + +F L E+K + YE E C+
Sbjct: 585 QETLEEKFGSFWTVIAANF-LNEYKKQHYEFKEDCN 619
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +1
Query: 166 REGSIQGFTRRSSSGRSWSPKRKWRLHPRSVSVGDKVLLPEYGGTKVSLENDEKEYHL 339
R+ + +GF SS G S W SVSV K + Y V L +DE ++H+
Sbjct: 507 RKLAFRGFVGVSSEGMSGGLALYW---DESVSVDVKDINKRYIDAYVRLSSDEPQWHI 561
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,659,149
Number of Sequences: 37544
Number of extensions: 244919
Number of successful extensions: 684
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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