Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0678
         (531 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12997| Best HMM Match : DSL (HMM E-Value=1.4013e-45)                29   1.8  
SB_58681| Best HMM Match : MAP65_ASE1 (HMM E-Value=3.3e-26)            29   2.4  
SB_50520| Best HMM Match : zf-DNL (HMM E-Value=3.4)                    29   3.1  
SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)            29   3.1  
SB_26814| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   4.1  
SB_7707| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_18544| Best HMM Match : 7tm_1 (HMM E-Value=0.00082)                 28   5.4  
SB_6258| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.2  
SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  

>SB_12997| Best HMM Match : DSL (HMM E-Value=1.4013e-45)
          Length = 239

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 133 YNQNCRRHCHPREGSIQGFTRRSSSGR 213
           Y  +CR HC P E  +QG      +GR
Sbjct: 167 YGDDCRIHCVPTESDVQGHYSCDGAGR 193


>SB_58681| Best HMM Match : MAP65_ASE1 (HMM E-Value=3.3e-26)
          Length = 631

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
 Frame = +2

Query: 56  LKIEMANAVKRLVPLLD--RVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARK 229
           LK+E    +K L  L D  R L  R    +   G +V+P K Q + L   +  +    +K
Sbjct: 57  LKMEKHERIKVLKVLRDTERQLCDRLRLPSHNIGDVVVPNKEQMRELEANIDYLQKQLQK 116

Query: 230 ENGDFI----PVQLVWVIKFFFQNTAVLK*ALKMMRKN 331
              +FI     +Q +W    +   TA+ K   KM+  N
Sbjct: 117 RTDEFIRMKASIQGMWTSLEYRPQTALEK---KMVEPN 151


>SB_50520| Best HMM Match : zf-DNL (HMM E-Value=3.4)
          Length = 277

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +2

Query: 110 VLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQLVWVIKF 277
           V  ++   IT  A G V     +  +LHG++  +  G   ++G F+ ++LV +IK+
Sbjct: 154 VRARKVNPITH-ARGEVKEISRREMLLHGDIFGILTGIFMQDGPFLVLRLVLIIKY 208


>SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)
          Length = 581

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 225 RAPGPTATTSPCKTLD*AFSGMTMPPA 145
           R P P  + +PCKT+  +FS +   P+
Sbjct: 179 RTPSPLLSATPCKTITQSFSNVAFSPS 205


>SB_26814| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 594

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = -2

Query: 89  IVLLHWPFRFLI 54
           IVLLHWP+RFL+
Sbjct: 177 IVLLHWPWRFLL 188


>SB_7707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
 Frame = -2

Query: 467 QKIHDHINVSFAHATTKLTELESHVKATIIQFSIFASMSDSL-----KR*Y---SFSSFS 312
           Q +HDH+++ F       T   +   A  +QF+++ S  +SL     +R +     +  +
Sbjct: 68  QGVHDHVDIEFLQPGGS-TSSRAAATAVELQFALYESYYNSLAVVLQRRDWENPGVTQLN 126

Query: 311 RLTLVPPYSGRRTLSPTLTER-G*SLHFLFGLQDRP 207
           RL   PP++  R      T+R    L  L G  D P
Sbjct: 127 RLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWDAP 162


>SB_18544| Best HMM Match : 7tm_1 (HMM E-Value=0.00082)
          Length = 370

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -1

Query: 414 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFSTAVFW 283
           NR  + C  YH ++ N  +Y+ +     + +I+     + AV W
Sbjct: 97  NRAFVVCSLYHVTLLNIDRYIAIKNTFHYPVIVTNQRITIAVVW 140


>SB_6258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 139 QNCRRHCHPREGSIQGFTRRSSSGRSWSP-KRKWRLHPRSV 258
           Q  R    P+E + QG      +   WSP KR W L+PR++
Sbjct: 39  QGTRMVIVPKEHAPQGKGNGYCTQGRWSPGKRGWLLYPRNI 79


>SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 476 NTSQKIHDHINVSFAHATTKLTELESHVKATII 378
           N   +IH+HI V+ AH    +T   +H+  T I
Sbjct: 18  NMVTRIHNHIMVTRAHNHIMVTRAHNHIMVTRI 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,889,499
Number of Sequences: 59808
Number of extensions: 303535
Number of successful extensions: 884
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)