Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0678
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084153-5|AAK84584.1|  108|Caenorhabditis elegans Hypothetical ...    67   8e-12
Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical pr...    31   0.68 
Z77670-1|CAB01247.1|  484|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z75525-7|CAH10769.1|  573|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z75525-6|CAA99765.2|  623|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF003925-1|AAB61344.1|  573|Caenorhabditis elegans mRNA capping ...    29   2.1  
U56081-1|AAB37243.1|  346|Caenorhabditis elegans T-BOX 12 protein.     28   3.6  
AJ252168-1|CAB65731.1|  346|Caenorhabditis elegans T-box DNA bin...    28   3.6  
AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical ...    28   3.6  
AF025468-3|AAF02176.1|  346|Caenorhabditis elegans Male abnormal...    28   3.6  
Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z73423-3|CAA97775.2|  327|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z69383-4|CAA93411.2|  326|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical ...    27   8.4  
AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical ...    27   8.4  
AC025723-2|AAK29943.1|  581|Caenorhabditis elegans Hypothetical ...    27   8.4  

>AC084153-5|AAK84584.1|  108|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.10 protein.
          Length = 108

 Score = 66.9 bits (156), Expect = 8e-12
 Identities = 30/59 (50%), Positives = 40/59 (67%)
 Frame = +2

Query: 71  ANAVKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFI 247
           +N +K   PL DRVL++R  A TKT GGI++PEK+Q KVL   VV+ G G R E G+ +
Sbjct: 10  SNVLKTFKPLYDRVLVERVAAETKTKGGIMLPEKSQGKVLEATVVSAGAGLRNEKGELV 68



 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 26/43 (60%), Positives = 32/43 (74%)
 Frame = +1

Query: 232 KWRLHPRSVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDIL 360
           K  L   +V  GD+VLLPEYGGTKV +E  +KEY +FRESD+L
Sbjct: 64  KGELVALTVKPGDRVLLPEYGGTKVVVE--DKEYSIFRESDLL 104


>Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical
           protein C01G10.7 protein.
          Length = 324

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 178 IQGFTRRSSSGRSWSPKRKWRLHPRSVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDI 357
           + G  R+S+ G  W    K  +HP  VSV  +  LP     K  +E  ++  H + E + 
Sbjct: 236 LDGLRRQSAEGWQWGFTGKQVIHPSQVSVVQEQFLP----PKDRIEWAQELVHAYSEHEA 291

Query: 358 LAK 366
           L K
Sbjct: 292 LGK 294


>Z77670-1|CAB01247.1|  484|Caenorhabditis elegans Hypothetical
           protein W05E10.1 protein.
          Length = 484

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 372 FNFRQYVRLSEEMIFFLIIFKAYFSTAVFWKK 277
           FN   Y  +S EM+ FLII     ST +FWK+
Sbjct: 434 FNSSGYTWVSVEMLTFLII--GALSTCIFWKQ 463


>Z75525-7|CAH10769.1|  573|Caenorhabditis elegans Hypothetical
           protein C03D6.3b protein.
          Length = 573

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 268 HPH*LNGDEVSIFFSGSRTDRYYF 197
           HPH L+G ++ ++   + TDRYYF
Sbjct: 51  HPH-LHGKKIGLWIDLTNTDRYYF 73


>Z75525-6|CAA99765.2|  623|Caenorhabditis elegans Hypothetical
           protein C03D6.3a protein.
          Length = 623

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 268 HPH*LNGDEVSIFFSGSRTDRYYF 197
           HPH L+G ++ ++   + TDRYYF
Sbjct: 63  HPH-LHGKKIGLWIDLTNTDRYYF 85


>AF003925-1|AAB61344.1|  573|Caenorhabditis elegans mRNA capping
           enzyme protein.
          Length = 573

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 268 HPH*LNGDEVSIFFSGSRTDRYYF 197
           HPH L+G ++ ++   + TDRYYF
Sbjct: 51  HPH-LHGKKIGLWIDLTNTDRYYF 73


>U56081-1|AAB37243.1|  346|Caenorhabditis elegans T-BOX 12 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 223 PKRKWRLHPRSVSVGDKVLLPEYGGTKVSLENDE--KEYHLFRES 351
           PK ++ LHP S   GD++L       K  L N+E  K  HL   S
Sbjct: 156 PKNRYYLHPDSPFTGDQLLKHVISFEKTKLTNNEVDKTGHLILNS 200


>AJ252168-1|CAB65731.1|  346|Caenorhabditis elegans T-box DNA
           binding protein protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 223 PKRKWRLHPRSVSVGDKVLLPEYGGTKVSLENDE--KEYHLFRES 351
           PK ++ LHP S   GD++L       K  L N+E  K  HL   S
Sbjct: 156 PKNRYYLHPDSPFTGDQLLKHVISFEKTKLTNNEVDKTGHLILNS 200


>AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical
           protein C17B7.5 protein.
          Length = 820

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +2

Query: 113 LIKRAEAITKTAGGI-VIPEKAQS--KVLHGEVVAVGPGARKENGDFIPVQLVWVIKFFF 283
           LI+R E   +    I +IPE  Q+  K  +  +  V     ++  D +P  + WV K   
Sbjct: 442 LIRRREKFERQTEPIQLIPESGQNYIKFTYDVINNVYSHKNEDGSDILPTDIHWVFKLKN 501

Query: 284 QNTAVLK*ALKM 319
              +V K  +KM
Sbjct: 502 NGKSVKKVVIKM 513


>AF025468-3|AAF02176.1|  346|Caenorhabditis elegans Male abnormal
           protein 9 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 223 PKRKWRLHPRSVSVGDKVLLPEYGGTKVSLENDE--KEYHLFRES 351
           PK ++ LHP S   GD++L       K  L N+E  K  HL   S
Sbjct: 156 PKNRYYLHPDSPFTGDQLLKHVISFEKTKLTNNEVDKTGHLILNS 200


>Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical
           protein K05D4.3 protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -1

Query: 447 QRF-ICARYN*TNRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFSTAVFWKKNF 271
           QRF IC      N ++IT  + +  VF    Y  L E++IFFL+  + + +  VF+  ++
Sbjct: 129 QRFCICFHPRSENYLKITHGTLNWIVFIGYAYFLL-EKVIFFLMCLRDFEAAKVFYMFSY 187

Query: 270 IT 265
           I+
Sbjct: 188 IS 189


>Z73423-3|CAA97775.2|  327|Caenorhabditis elegans Hypothetical
           protein C03A3.1a protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = -2

Query: 383 IIQFSIFASMSDSLKR*YSFSSFSRLTLVPPYSGRRTLSPTLTERG*SLH 234
           +   S+F  +SD LK  +  S+ + L ++  ++ ++ L PT+     ++H
Sbjct: 17  LFMLSVFPKISDPLKLKFQISAHAVLAILFAFAAQQFLKPTINGSFTNIH 66


>Z69383-4|CAA93411.2|  326|Caenorhabditis elegans Hypothetical
           protein F13E9.9 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 146 AGGIVIPEKAQS--KVLHGEVVAVGPGARKENGD 241
           +G   IPEK     K + G+  ++ PG +K+NGD
Sbjct: 207 SGAASIPEKVVDGVKSIPGKAKSILPGGKKKNGD 240


>AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8b protein.
          Length = 219

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = +1

Query: 67  NGQCSKTIGSSSGPCPDQKS*SYNQNCRRHCHPREGSIQGFTRRSSSGRSWSPKRKWRLH 246
           + +CS +       CP+ +        + H   RE   +   +RS+S R    KR  R  
Sbjct: 102 DSECSCSCSGGECSCPESEDEKEKDRRKMHKTSRERDRESHRKRSNSPRDRDRKRGKRSR 161

Query: 247 PRS 255
            RS
Sbjct: 162 SRS 164


>AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8a protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = +1

Query: 67  NGQCSKTIGSSSGPCPDQKS*SYNQNCRRHCHPREGSIQGFTRRSSSGRSWSPKRKWRLH 246
           + +CS +       CP+ +        + H   RE   +   +RS+S R    KR  R  
Sbjct: 228 DSECSCSCSGGECSCPESEDEKEKDRRKMHKTSRERDRESHRKRSNSPRDRDRKRGKRSR 287

Query: 247 PRS 255
            RS
Sbjct: 288 SRS 290


>AC025723-2|AAK29943.1|  581|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.8 protein.
          Length = 581

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = -1

Query: 426 YN*TNRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFSTAVFWKKNFITHTN*TG 247
           Y+  N I   C   +H++F  R Y+ L + + +     +A   T  FW++  +T    TG
Sbjct: 120 YHYRNTIETMC--NNHTLFCKRLYIYLQQNLDWMRSQVQANPPTDPFWRQVNLTFAQLTG 177

Query: 246 MKSPFSFR 223
           +   +S R
Sbjct: 178 IYDAYSKR 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,275,718
Number of Sequences: 27780
Number of extensions: 221894
Number of successful extensions: 645
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)