Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0678
         (531 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14980.1 68414.m01790 10 kDa chaperonin (CPN10) identical to ...    62   3e-10
At1g23100.1 68414.m02888 10 kDa chaperonin, putative similar to ...    61   5e-10
At5g20720.2 68418.m02461 20 kDa chaperonin, chloroplast (CPN21) ...    58   5e-09
At5g20720.1 68418.m02460 20 kDa chaperonin, chloroplast (CPN21) ...    58   5e-09
At2g44650.1 68415.m05557 chloroplast chaperonin 10 (cpn10) ident...    37   0.007
At3g60210.1 68416.m06728 chloroplast chaperonin 10, putative sim...    36   0.013
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    29   1.5  
At3g52480.1 68416.m05771 expressed protein                             29   2.0  
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    27   6.0  
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu...    27   6.0  
At5g53010.1 68418.m06584 calcium-transporting ATPase, putative         27   7.9  
At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (AT...    27   7.9  

>At1g14980.1 68414.m01790 10 kDa chaperonin (CPN10) identical to
           SP:P34893 from [Arabidopsis thaliana]
          Length = 98

 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 28/60 (46%), Positives = 44/60 (73%)
 Frame = +2

Query: 80  VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQL 259
           +KRL+P  +R+L++R     KT  GI++PEK+ SK+  G+V+AVGPG+R ++G  IPV +
Sbjct: 2   MKRLIPTFNRILVQRVIQPAKTESGILLPEKS-SKLNSGKVIAVGPGSRDKDGKLIPVSV 60



 Score = 53.6 bits (123), Expect = 8e-08
 Identities = 26/44 (59%), Positives = 31/44 (70%)
 Frame = +1

Query: 238 RLHPRSVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 369
           +L P SV  GD VLLPEYGGT+V L   E EYHLFR+ D+L  +
Sbjct: 54  KLIPVSVKEGDTVLLPEYGGTQVKL--GENEYHLFRDEDVLGTL 95


>At1g23100.1 68414.m02888 10 kDa chaperonin, putative similar to 10
           kDa chaperonin SP:P34893 from [Arabidopsis thaliana]
          Length = 97

 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 29/59 (49%), Positives = 43/59 (72%)
 Frame = +2

Query: 83  KRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQL 259
           KRL+P L+RVL+++    +KT  GI++PEK+ S++  G V+AVGPGAR   G+ IPV +
Sbjct: 3   KRLIPTLNRVLVEKILPPSKTVSGILLPEKS-SQLNSGRVIAVGPGARDRAGNLIPVSV 60



 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 25/47 (53%), Positives = 32/47 (68%)
 Frame = +1

Query: 229 RKWRLHPRSVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 369
           R   L P SV  GD VLLPE+GGT+V L   EKE+ L+R+ DI+A +
Sbjct: 51  RAGNLIPVSVKEGDNVLLPEFGGTQVKL--GEKEFLLYRDEDIMATL 95


>At5g20720.2 68418.m02461 20 kDa chaperonin, chloroplast (CPN21)
           (CHCPN10) (CPN20) identical to chloroplast 20 kDa
           chaperonin, chloroplast precursor (Protein Cpn21),
           chloroplast protein Cpn10, chloroplast chaperonin 10
           (Ch-CPN10), SP|O65282 from [Arabidopsis thaliana];
           identical to cDNA chaperonin 20 GI:14587372
          Length = 253

 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 29/58 (50%), Positives = 37/58 (63%)
 Frame = +2

Query: 80  VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPV 253
           +K L PL DRV IK AEA  KTAGG+++ E  + K   G V+AVGPG+  E G   P+
Sbjct: 157 IKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPL 214



 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 27/42 (64%), Positives = 30/42 (71%)
 Frame = +2

Query: 95  PLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPG 220
           PL DRVL+K  EA  KT GGI++P  AQSK   GEVVAVG G
Sbjct: 64  PLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEG 105


>At5g20720.1 68418.m02460 20 kDa chaperonin, chloroplast (CPN21)
           (CHCPN10) (CPN20) identical to chloroplast 20 kDa
           chaperonin, chloroplast precursor (Protein Cpn21),
           chloroplast protein Cpn10, chloroplast chaperonin 10
           (Ch-CPN10), SP|O65282 from [Arabidopsis thaliana];
           identical to cDNA chaperonin 20 GI:14587372
          Length = 253

 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 29/58 (50%), Positives = 37/58 (63%)
 Frame = +2

Query: 80  VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPV 253
           +K L PL DRV IK AEA  KTAGG+++ E  + K   G V+AVGPG+  E G   P+
Sbjct: 157 IKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPL 214



 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 27/42 (64%), Positives = 30/42 (71%)
 Frame = +2

Query: 95  PLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPG 220
           PL DRVL+K  EA  KT GGI++P  AQSK   GEVVAVG G
Sbjct: 64  PLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEG 105


>At2g44650.1 68415.m05557 chloroplast chaperonin 10 (cpn10)
           identical to chloroplast chaperonin 10 GI:14041813 from
           [Arabidopsis thaliana]
          Length = 139

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
 Frame = +2

Query: 86  RLVPLLDRVLIKRAEAITKTAGGIVIPEKAQ--SKVLHGEVVAVGPGARKENG 238
           ++VP  DRVL++  +   K++GG+++P+ A    + L GE+++VG    ++ G
Sbjct: 51  KVVPQADRVLVRLEDLPIKSSGGVLLPKAAVKFERYLTGEIISVGSEVGQQVG 103


>At3g60210.1 68416.m06728 chloroplast chaperonin 10, putative
           similar to chloroplast chaperonin 10 GI:14041813 from
           [Arabidopsis thaliana]
          Length = 138

 Score = 36.3 bits (80), Expect = 0.013
 Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
 Frame = +2

Query: 86  RLVPLLDRVLIKRAEAITKTAGGIVIPEKAQ--SKVLHGEVVAVG 214
           ++VP  DRVL++      K++GG+++P+ A    + L GEVV+VG
Sbjct: 50  KVVPQADRVLVRLEVLPEKSSGGVLLPKSAVKFERYLTGEVVSVG 94


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +1

Query: 61  NRNGQCSKTIGSSSGPCPDQKS*SYNQNCRRHCHPREGSIQGFTRRSSS---GRSWSPKR 231
           +R+   SKT   S     ++KS S +Q+      PR+  +    RRS S    RS SP+R
Sbjct: 215 SRSRSISKTNSGSKSYSGERKSRSTSQSSDASISPRKRRLSNSRRRSRSRSVRRSLSPRR 274

Query: 232 KWRLH 246
           + R+H
Sbjct: 275 R-RIH 278


>At3g52480.1 68416.m05771 expressed protein
          Length = 209

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -1

Query: 330 FFLIIFKAYFSTAVFWKKNFITHTN*TGMKSPFSFRAPGPTATTSPCKTL 181
           F L+   A F+  ++WK+ F   +     +  FS R    TAT  P K L
Sbjct: 16  FCLVAVTAQFAYVLWWKRRFRRRSIAGSERDAFSSRGGDLTATPPPSKEL 65


>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 240 SPFSFRAPGPTATTSPCKTLD*AFSGMTMPPAV 142
           +P +  AP PT TT P        S +T PPAV
Sbjct: 45  APPTTAAPPPTTTTPPVSAAQPPASPVTPPPAV 77


>At1g07350.1 68414.m00783 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 382

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = +1

Query: 121 KS*SYNQNCRRHCHPREGSIQGFTRRSSSGRSWSPKRKWRLHPRSVSV----GDKVLLPE 288
           +S SY++NCR     R+ S     R  S  RS+SP  ++R   RS S      D+   P 
Sbjct: 255 RSRSYSRNCRA----RDRSPYYMRRYRSRSRSYSP--RYRARDRSCSPYYRGRDRSYSPH 308

Query: 289 YGGTKVSLENDEKEYHLFR 345
           Y G   S   + + Y   R
Sbjct: 309 YQGRDRSYSPESRYYRRHR 327


>At5g53010.1 68418.m06584 calcium-transporting ATPase, putative 
          Length = 1049

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 98  LLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFI 247
           LL + L KR   +  T  GI  P+  +   +   +   G  A KEN DFI
Sbjct: 774 LLVQALKKRGHIVAATGMGIHDPKTLREADVSLAMGVGGTAAAKENSDFI 823


>At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase
           (ATHIM) identical to SP|P34881 DNA
           (cytosine-5)-methyltransferase AthI (EC 2.1.1.37)
           {Arabidopsis thaliana}
          Length = 1534

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/55 (27%), Positives = 32/55 (58%)
 Frame = +2

Query: 128 EAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQLVWVIKFFFQNT 292
           E++ KT+ G  + ++A   ++ GE+VAVG     E  D   +  ++ +++ F++T
Sbjct: 715 ESLGKTSAGEPLYQQA---LVGGEMVAVGGAVTLEVDDPDEMPAIYFVEYMFEST 766


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,500,253
Number of Sequences: 28952
Number of extensions: 206540
Number of successful extensions: 537
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)