Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0677
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   4.9  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    26   4.9  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    26   6.5  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    26   6.5  
SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac...    25   8.6  
SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyce...    25   8.6  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    25   8.6  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    25   8.6  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    25   8.6  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 465  SVYFRQHSIANLLLFVKFSCFKKLK 391
            +++FRQH +  +     FSC  K+K
Sbjct: 1108 NLHFRQHDVLGMKNLFNFSCSNKIK 1132


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 428 FYLSNFLVLKN*SDNSFLVNYIQKCLSYIIFL-CKHYVNTRMQDIN*INIT 279
           FY+S F +  + + N F   Y+  C++ + F+  K Y  + +  ++ ++IT
Sbjct: 498 FYVSLFPIGGSPNANDFFQGYLAACITLVFFIGYKIYDRSHIPSLDKLDIT 548


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 475 ICNEYYS*IKINEYGIYVFLRFS 543
           + N  Y+  K  EYGIYV L F+
Sbjct: 161 VANPSYAPTKYEEYGIYVALSFA 183


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 178 MTLLLMMMKP*YKTTCALYCAYIRKASMSVEVFNIK 71
           +TLLL      Y+TT      Y+++ + ++  FNI+
Sbjct: 77  VTLLLFYFSGLYRTTIVYPSRYVQQVNKAMRFFNIR 112


>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 208

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 60  KVVYFILNTSTDIEAFLI*AQYNAQVVLY 146
           +  ++  N + DI AFL   +YN  ++LY
Sbjct: 117 RYAFYAFNLNGDIPAFLTWLRYNTFLILY 145


>SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 192

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 617 KNTVKQ*IAAKNIIQHSCDIVNKNNENLKK 528
           K T       + ++QH C +V  N++NLK+
Sbjct: 135 KGTYADDCIVQRVMQHKCYLVATNDKNLKQ 164


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 428 FYLSNFLVLKN*SDNSFLVNYIQKCLSYIIFL 333
           FY+S FL+  + + N F   Y+  C++   F+
Sbjct: 498 FYVSLFLIGGSPNANDFFQGYLAACIALAFFI 529


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 16  NKFILR*KPENYLGKKWYILY*ILPPTLK 102
           N F L+ K +  LGKK  ++Y  LPP ++
Sbjct: 347 NIFTLKSKIDQALGKKSAVIYGSLPPEVR 375


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/36 (22%), Positives = 21/36 (58%)
 Frame = -2

Query: 193 VVSVHMTLLLMMMKP*YKTTCALYCAYIRKASMSVE 86
           V+  H   +++ + P ++    ++C  +RK ++SV+
Sbjct: 369 VIEPHYNSMILFLWPRFQAVMDMHCESLRKTNLSVK 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,667
Number of Sequences: 5004
Number of extensions: 48817
Number of successful extensions: 100
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)