Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0677
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8683| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_31615| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.053)               28   7.0  

>SB_8683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 603 TIDSSKKYYSTFVRYCKQK**KSQKDVN 520
           TID  +KYY   +R C  K  K +KDV+
Sbjct: 134 TIDKIQKYYGNAIRACINKKAKKEKDVD 161


>SB_31615| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.053)
          Length = 870

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 121 CAYIRKASMSVEVFNIKYTTFFLNNFLVFIVI 26
           C++  KA  SV+ F  KY TF    +LV+I++
Sbjct: 417 CSFFLKADYSVQCFTEKYNTFM---YLVYILL 445


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,143,070
Number of Sequences: 59808
Number of extensions: 312528
Number of successful extensions: 420
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)