Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0676
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    29   0.68 
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    27   3.6  
SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|...    26   4.8  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   6.4  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.4  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   8.4  

>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 497 CFGSNNQQKRQVSLQVITNAVCARTYGNSVIIGSTLCV 610
           C   + ++ R V ++ ITNA C + Y   VI G+ L +
Sbjct: 455 CIYDSAKRSRLVYIEKITNAACYQEYSAIVINGTALAI 492


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 282 LYQKRG*TDGLGVPGSPAVSRGHGAGVG 199
           LY + G T+G   P  P    G GAG G
Sbjct: 63  LYDQYGITEGNAAPPPPGAEGGPGAGFG 90


>SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 207

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 255 GLGVPGSPAVSRGHGAGVGQ*GTPQMEVLPFVSAITSPAR 136
           G+GV   P V+ G G+ +G       ++ P   A+ SPA+
Sbjct: 160 GMGVIVLPGVTIGEGSVIGAGAVVTKDIPPNTLAVGSPAK 199


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 264 TLAFGTANIFSGGTRVTTSSVHLHGSYNMNN 356
           T +FG A      T  +TSS    GS N NN
Sbjct: 67  TFSFGKAATTGNSTNASTSSPFSFGSTNTNN 97


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 8/20 (40%), Positives = 17/20 (85%)
 Frame = +1

Query: 136 SCWTCDRTHEWQNFHLRSSL 195
           SC++  +TH++++F ++SSL
Sbjct: 10  SCFSLQKTHQYRSFWIQSSL 29


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 118 VGGRTTHNPGTVEVSGFLGASKTLSPGDTDL 26
           +G    H  G+V   GF G+    +P DT +
Sbjct: 70  IGSAIGHTVGSVITGGFSGSGSNNAPADTSV 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,394
Number of Sequences: 5004
Number of extensions: 36895
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)