Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0676
(733 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3) 30 2.2
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_15349| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_28576| Best HMM Match : Equine_IAV_S2 (HMM E-Value=2.8) 28 6.8
SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19) 28 6.8
SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_32032| Best HMM Match : PAN (HMM E-Value=0.029) 28 9.0
SB_19049| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_45863| Best HMM Match : Peptidase_M10 (HMM E-Value=9e-31) 28 9.0
SB_41436| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 471
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +3
Query: 351 NNLNNDVAIINHNHVG-FNNNIQRINL 428
NN+NN+ IIN+N++ NNNI IN+
Sbjct: 409 NNINNNNIIINNNNIIIINNNIININI 435
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 357 LNNDVAIINHNHVGFNNNIQRINL 428
+NN+ IIN+N++ NNNI N+
Sbjct: 393 INNNNIIINNNNIIINNNINNNNI 416
>SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3)
Length = 189
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 327 HLHGSYNMNNLNNDVAIINHNHVGFNNNIQRIN 425
+++ + N NN NN++ IN+N+ NNNI N
Sbjct: 92 NINNNNNNNNNNNNINNINNNNNNNNNNINNNN 124
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 306 RVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNN 410
R +S++ + N N++NN+ + IN+N+ NNN
Sbjct: 1759 RNNNNSINNRNNTNNNSINNNNSSINNNNSSINNN 1793
>SB_15349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 869
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +2
Query: 470 CRLREDLRCCFGSNNQQKRQVSLQVITNAVCARTY 574
C+L + RCC+G N R + + C R +
Sbjct: 344 CKLGKSFRCCYGCRNNDSRLHKIVQVDEDNCCRCH 378
>SB_28576| Best HMM Match : Equine_IAV_S2 (HMM E-Value=2.8)
Length = 213
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 339 SYNMNNLNNDVAIINHNHVGFNNN 410
S N NN+NN++ I N+N+ NNN
Sbjct: 126 SDNNNNINNNIIINNNNNNDENNN 149
>SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19)
Length = 320
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 172 SAIRECDHKSSKMGVSTSVGGRTTHNPGTVEVSGF 68
+A R+CD +S S TTH G +++GF
Sbjct: 267 AANRDCDDSASSTSDKESAPDETTHASGNTKLTGF 301
>SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -2
Query: 270 RG*TDGLGVPGSPAVSRGHGAGVGQ*GTPQMEVLPFVSAITSPAR 136
RG T G+ A + HGA GQ + + EV P V+A T P++
Sbjct: 14 RGQTSLKSQNGANAWHQKHGAKPGQSSSTRKEVKPRVAAKTEPSK 58
>SB_32032| Best HMM Match : PAN (HMM E-Value=0.029)
Length = 610
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 395 WLQQQHPAHQPSQWKQQLCWYLGLGCRLR 481
W+ + HP H+ ++LC+ +G C R
Sbjct: 457 WMNESHPRHEDGIVSRRLCYRVGGDCCAR 485
>SB_19049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 282 ANIFSGGTRVTTSSVHLHGSYNMN-NLNNDVAIINHNHVGFNNNIQRINL 428
A I++GGT + + H N N N NN+ N N+ NN I ++
Sbjct: 978 AYIYAGGTATPDTGISEHNDNNNNTNTNNNSDNNNTNNNSDNNTINNYSV 1027
>SB_45863| Best HMM Match : Peptidase_M10 (HMM E-Value=9e-31)
Length = 273
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 345 NMNNLNNDVAIINHNHVGFNNN 410
N NN+NN+ I N+N++ NNN
Sbjct: 238 NNNNINNNNNINNNNNINNNNN 259
>SB_41436| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 327 HLHGSYNMNNLNNDVAIINHNHVGFNNNIQR 419
H +G NN NN+ IIN+N+ NNI++
Sbjct: 24 HNNGHNITNNNNNNNIIINNNNDNSKNNIKK 54
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,629,563
Number of Sequences: 59808
Number of extensions: 349021
Number of successful extensions: 2230
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2051
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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