Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0676
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023842-4|CAA19517.2|  229|Caenorhabditis elegans Hypothetical ...    31   0.64 
Z66521-15|CAM33508.2|  262|Caenorhabditis elegans Hypothetical p...    30   1.9  
U40933-2|AAL27242.1|  158|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>AL023842-4|CAA19517.2|  229|Caenorhabditis elegans Hypothetical
           protein Y44A6D.3 protein.
          Length = 229

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 294 SGGTRVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNNIQ 416
           +   R+   S H  G   +NN+NN+    NHNH   NNNIQ
Sbjct: 68  AAAARLNAQSSHSSGPARLNNMNNN-NNNNHNH-SKNNNIQ 106


>Z66521-15|CAM33508.2|  262|Caenorhabditis elegans Hypothetical
           protein W02B12.13 protein.
          Length = 262

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 255 GLGVPGSPAVSRGHGAGVGQ*GT-PQMEVLPFVSAI 151
           G+GVPG+  VS G G  VG  G+ P   + PF  AI
Sbjct: 153 GVGVPGNDPVSVGTGVSVGLDGSGPAGGLPPFAEAI 188


>U40933-2|AAL27242.1|  158|Caenorhabditis elegans Hypothetical
           protein F20D12.7 protein.
          Length = 158

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 190 NSADGSSAIRECDHKSSKMGVSTSVGGRTTHNPGTVEVSGFLGASKTLS 44
           NS DGS    E    SS + V  ++GGR  +  GT+++  + G  K LS
Sbjct: 78  NSTDGSDEEEEITEPSSVLLVMITMGGRMANVVGTMKL--YKGLGKYLS 124


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 152 SQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSQPGGY 33
           SQ + DG +HQ   +  PQ  Y +   +   + +  P GY
Sbjct: 355 SQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 152 SQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSQPGGY 33
           SQ + DG +HQ   +  PQ  Y +   +   + +  P GY
Sbjct: 355 SQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,316,416
Number of Sequences: 27780
Number of extensions: 239076
Number of successful extensions: 844
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)