Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0676
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13800.1 68417.m02139 permease-related contains 9 predicted t...    29   2.4  
At4g30180.1 68417.m04291 expressed protein                             29   3.2  
At1g10750.1 68414.m01229 expressed protein similar to gi 3128199...    28   5.6  
At5g67370.1 68418.m08495 expressed protein similar to unknown pr...    27   9.7  
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|...    27   9.7  
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|...    27   9.7  
At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase...    27   9.7  

>At4g13800.1 68417.m02139 permease-related contains 9 predicted
           transmembrane domains; contains Pfam PF05653: Protein of
           unknown function (DUF803); identified as COG0697,
           Permeases of the drug/metabolite transporter (DMT)
           superfamily
          Length = 336

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 151 HKSSKMGVSTSVGGRTTHNPGTVEVSGFLGASKT 50
           HK+  MG STS+ G T+H+P    V    G+S++
Sbjct: 294 HKTKDMGNSTSLRGSTSHSPRDTPVFINSGSSRS 327


>At4g30180.1 68417.m04291 expressed protein 
          Length = 158

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +3

Query: 6   SNLTTTTRSVSPGLRVLDAPRK 71
           SN TTTT S S G+R+L+ P K
Sbjct: 80  SNPTTTTSSSSDGIRILERPDK 101


>At1g10750.1 68414.m01229 expressed protein similar to gi 3128199
           F4I1.5 putative proteinase from Arabidopsis thaliana BAC
           gb AC004521
          Length = 467

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 502 REQQPTKTPSEPPGHHQRRLRP 567
           R Q+P   P  P GH++R LRP
Sbjct: 145 RGQKPLDPPERPRGHNRRGLRP 166


>At5g67370.1 68418.m08495 expressed protein similar to unknown
           protein (gb|AAC18972.1)
          Length = 327

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 88  YQDCGWFCRQRWCSPPSCWTCDR 156
           Y++ GW+  Q W  PP     DR
Sbjct: 185 YEESGWYDGQMWVKPPEVLARDR 207


>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 435

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 3   PSNLTTTTRSVSPGLRVLDAPRKPL 77
           PS+ TTTTR+ SP   + ++   PL
Sbjct: 27  PSSSTTTTRATSPSSTISESSNSPL 51


>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 424

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 3   PSNLTTTTRSVSPGLRVLDAPRKPL 77
           PS+ TTTTR+ SP   + ++   PL
Sbjct: 27  PSSSTTTTRATSPSSTISESSNSPL 51


>At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK9) mitogen-activated protein
           kinase kinase (MAPKK) family, PMID:12119167
          Length = 310

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 515 QQKRQVSLQVITNAVCARTYGNSVIIGSTLCVSGANGRSTC 637
           +++RQ++L++    +  R +  S    +T  V+G NG S C
Sbjct: 5   RERRQLNLRLPLPPISDRRFSTSSSSATTTTVAGCNGISAC 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,816,953
Number of Sequences: 28952
Number of extensions: 224171
Number of successful extensions: 716
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)