Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0675
(609 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 91 5e-19
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 90 1e-18
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 89 3e-18
02_03_0262 + 17015383-17015619,17017932-17018879 30 1.2
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 29 2.2
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 29 2.2
04_03_0265 - 13638816-13641348,13641432-13641490 29 3.8
05_02_0049 - 6083364-6084111,6084140-6084246 28 5.0
01_06_0048 + 25951544-25952074 28 5.0
05_07_0028 + 27153663-27153932,27154966-27155175,27156220-271564... 28 6.7
11_01_0129 - 1073002-1073073,1073463-1073585,1073667-1073732,107... 27 8.8
03_01_0219 + 1731267-1731728,1732148-1732235,1732330-1732417,173... 27 8.8
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 91.5 bits (217), Expect = 5e-19
Identities = 40/74 (54%), Positives = 50/74 (67%)
Frame = +3
Query: 255 YESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVK 434
Y+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK + C+R K
Sbjct: 83 YQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTK 142
Query: 435 QFHNSTIRFPLPKR 476
QFHNS I+FPL R
Sbjct: 143 QFHNSNIKFPLVYR 156
Score = 77.0 bits (181), Expect = 1e-14
Identities = 30/78 (38%), Positives = 51/78 (65%)
Frame = +1
Query: 22 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 201
+ +Y+V+GR LP+ + P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+++
Sbjct: 5 RFHQYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAIN 64
Query: 202 XXXXXXXXXXXNFGIWLR 255
N+GIWLR
Sbjct: 65 EIFERNPTTIKNYGIWLR 82
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/74 (52%), Positives = 50/74 (67%)
Frame = +3
Query: 255 YESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVK 434
Y+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK + C+R K
Sbjct: 100 YQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTK 159
Query: 435 QFHNSTIRFPLPKR 476
QFHN +I+FPL R
Sbjct: 160 QFHNGSIKFPLVYR 173
Score = 56.0 bits (129), Expect = 2e-08
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 17/95 (17%)
Frame = +1
Query: 22 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRF----------W-------YFL 150
+ +Y+V+GR LP+ + P +Y+M++++ + + AKS+F W YFL
Sbjct: 5 RFHQYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFCSSYLVRFADWGACPVCRYFL 64
Query: 151 RQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLR 255
R+LKK KK+ G+++ N+GIWLR
Sbjct: 65 RKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLR 99
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 88.6 bits (210), Expect = 3e-18
Identities = 39/74 (52%), Positives = 49/74 (66%)
Frame = +3
Query: 255 YESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVK 434
Y+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK + C+R K
Sbjct: 83 YQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTK 142
Query: 435 QFHNSTIRFPLPKR 476
QFH S I+FPL R
Sbjct: 143 QFHKSDIKFPLVYR 156
Score = 77.8 bits (183), Expect = 6e-15
Identities = 31/78 (39%), Positives = 51/78 (65%)
Frame = +1
Query: 22 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 201
+ +Y+V+GR LP+ + P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+I+
Sbjct: 5 RFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAIN 64
Query: 202 XXXXXXXXXXXNFGIWLR 255
N+GIWLR
Sbjct: 65 EIFEKNPTTIKNYGIWLR 82
>02_03_0262 + 17015383-17015619,17017932-17018879
Length = 394
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 358 LCLAPISL*H*VTAPPTLRSRYSRYMLCTPERDSYVARYQNS 233
L L+P L + + P L + + RYM C P R S+V+ N+
Sbjct: 62 LSLSPWDLPYELEDPDPLEAPFDRYMACIPFRASFVSDSDNN 103
>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 356 QSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAPLQET 496
Q P S T+YQ SN + Q + HHQ+PI + + T
Sbjct: 950 QCPQSTETNYQRCSNGETESNQPVSQNELEDHHQVPITASSSTNNST 996
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +2
Query: 374 NTDYQSGSNQGCC----VSPSTGQTVPQQHHQIPIAQTCAP 484
N + G N+G P+ QT P+QH Q+PI T P
Sbjct: 406 NNHHHQGGNRGGAHHVGTPPNQQQTKPEQHPQLPIGATKQP 446
>04_03_0265 - 13638816-13641348,13641432-13641490
Length = 863
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -2
Query: 533 RSKC*ASCSEGIKSLVVVHTFGQWESDG---AVVELFDLWTATRSSLDY 396
R C SC + V+ +GQ +SDG +V E+F L T +L Y
Sbjct: 422 RDDCKQSCLKNCSCRAVMFRYGQNDSDGTCFSVSEVFSLQTIQPEALHY 470
>05_02_0049 - 6083364-6084111,6084140-6084246
Length = 284
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +3
Query: 384 IKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFATRGLALTSCNCNVR 551
IKV AA RP+ + N T+ P P T AT A SC VR
Sbjct: 221 IKVTPPPPAALPRPKAVKGKNGTVLAPAPAPADSDTAATTAATVSTAAHSCKVRVR 276
>01_06_0048 + 25951544-25952074
Length = 176
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -2
Query: 149 RKYQKRDLATIGSGEKILILYKGGLGSFSDG 57
RKY D + G G L+ GG GS SDG
Sbjct: 24 RKYHSVDSSAAGRGTSNLVRLGGGSGSGSDG 54
>05_07_0028 +
27153663-27153932,27154966-27155175,27156220-27156414,
27156491-27156840,27157198-27157423,27157524-27157692,
27158145-27158990,27159647-27159818,27159934-27160052,
27160117-27160155,27161033-27161157,27161250-27161309,
27161471-27161542,27161980-27162114
Length = 995
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -3
Query: 145 NTRNEIWRQLDPERKFSFYTREVWARSPTGA 53
N + WRQ+ F + E W RSPT +
Sbjct: 715 NNMLDTWRQVTKNTMFDEWLNEWWKRSPTSS 745
>11_01_0129 -
1073002-1073073,1073463-1073585,1073667-1073732,
1074227-1074347,1074536-1074603,1074792-1074863,
1076045-1076222,1077554-1077888
Length = 344
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = -1
Query: 249 PDTKILNLDGAFLWNFLNRDNFTSGLLELLKLSQEI 142
PD++I+ +DGAF D F +G +E+L+L++E+
Sbjct: 175 PDSRIVYIDGAF-------DLFHAGHVEILRLAREL 203
>03_01_0219 +
1731267-1731728,1732148-1732235,1732330-1732417,
1732528-1732573,1732687-1732785,1734363-1734431,
1735706-1736036,1736123-1736256,1736400-1737251
Length = 722
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 359 SPSSFNTDYQSGSNQGCCVSPSTGQTVPQQHH 454
S + T ++G+N C STGQT P Q H
Sbjct: 561 SATKLATKCENGANVSCDGVGSTGQTPPLQQH 592
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,234,389
Number of Sequences: 37544
Number of extensions: 371366
Number of successful extensions: 1091
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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