Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0675
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19131| Best HMM Match : No HMM Matches (HMM E-Value=.)             109   1e-24
SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30)                 29   3.9  
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_20318| Best HMM Match : VPS9 (HMM E-Value=7.2)                      28   5.1  
SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)    28   5.1  
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)                     28   6.8  

>SB_19131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score =  109 bits (263), Expect = 1e-24
 Identities = 52/77 (67%), Positives = 58/77 (75%)
 Frame = +3

Query: 213 EKPHQD*EFWYLATYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKV 392
           +KP Q   F     Y+SRSG HNMYREYRDL+V GAVT CYRDM ARHRAR +SIQI+KV
Sbjct: 270 KKPLQIKNFGIWLRYDSRSGTHNMYREYRDLTVSGAVTACYRDMAARHRARGYSIQIMKV 329

Query: 393 EVIKAAACRRPQVKQFH 443
           EVI A+  RRP VKQ H
Sbjct: 330 EVIPASKARRPHVKQMH 346



 Score = 94.3 bits (224), Expect = 7e-20
 Identities = 41/77 (53%), Positives = 54/77 (70%)
 Frame = +1

Query: 25  LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXX 204
           L+E++VIGR +P++    PPLYKMRIF+PD +VA+S+FWYF+ QLK+ KK+ GEIV    
Sbjct: 207 LKEFQVIGRLMPNKKLTVPPLYKMRIFAPDDVVARSKFWYFISQLKRMKKSQGEIVSCQQ 266

Query: 205 XXXXXXXXXXNFGIWLR 255
                     NFGIWLR
Sbjct: 267 IYEKKPLQIKNFGIWLR 283


>SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30)
          Length = 300

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 372 SIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFATRGL 521
           S++I    ++   AC  P V   HN  +R  + + VHH KR+ T   R +
Sbjct: 246 SLEITCFFLLHVNACCNPVVYSLHNPKLRKCMNRLVHH-KRVRTSPPRAV 294


>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +1

Query: 34  YEVIGRKLP-SENEPKPPLYKMRI 102
           YEV+G+ +  S N+PK PL K+R+
Sbjct: 285 YEVLGKSVNNSRNQPKDPLKKLRV 308


>SB_20318| Best HMM Match : VPS9 (HMM E-Value=7.2)
          Length = 230

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/82 (24%), Positives = 38/82 (46%)
 Frame = +1

Query: 352 DTEPELIQYRLSKWK*SRLLRVAVHRSNSSTTAPSDSHCPNVCTTTRDLIPSLQEA*HLL 531
           + EP ++  +      S  +  AV+   ++   P+D++ P+  T  R  I  L     +L
Sbjct: 39  EAEPSIVWQQQQPSFISYAVHEAVNVWRNAHHNPADTYVPSPSTMVRAAIMDLSATADML 98

Query: 532 LVIVMYVT*Q*NPCKNGIKFLF 597
           L  +MYV  + NP    ++ L+
Sbjct: 99  LNNIMYVIKRANPNDPAVQHLW 120


>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
          Length = 2581

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
 Frame = +1

Query: 22   QLREYEVIGRKLPSENEPKPPLYKMRIFSPD-----PIVAKSRFWYFLRQLKKFKKTTGE 186
            +LR Y++I ++LP+E+E K   +  +I +P+       VA +  W  L + K F  +TG 
Sbjct: 1424 KLRLYQIISQRLPTEDENKYD-FVTKISTPNATWEREFVANASLW-LLDEEKSFSISTGA 1481

Query: 187  I 189
            +
Sbjct: 1482 L 1482


>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
          Length = 1072

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 323 HSVLQRYGS*TQSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQHHQIP 463
           H + Q+     QSPS+ N    +             Q  PQQHHQ+P
Sbjct: 302 HHLPQQQPQQLQSPSNHNAQPMTTQAAAFFQQVPEQQQSPQQHHQLP 348


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,708,873
Number of Sequences: 59808
Number of extensions: 426579
Number of successful extensions: 1241
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)