Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0675
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW     94   7e-20
At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)          93   1e-19
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si...    90   9e-19
At3g57460.1 68416.m06397 expressed protein weak similarity to SP...    30   1.0  
At2g35200.1 68415.m04317 expressed protein                             30   1.0  
At3g43870.1 68416.m04696 hypothetical protein                          29   3.2  
At1g26870.1 68414.m03277 no apical meristem (NAM) family protein...    28   4.2  

>At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW
          Length = 178

 Score = 93.9 bits (223), Expect = 7e-20
 Identities = 40/71 (56%), Positives = 51/71 (71%)
 Frame = +3

Query: 255 YESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVK 434
           Y+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQIIK   + A+ C+R   K
Sbjct: 83  YQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPASLCKRESTK 142

Query: 435 QFHNSTIRFPL 467
           QFHNS I+FPL
Sbjct: 143 QFHNSKIKFPL 153



 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 31/78 (39%), Positives = 54/78 (69%)
 Frame = +1

Query: 22  QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 201
           +L +Y+V+GR LP+E + +P +Y+M++++ + ++AKS+FWY+LR+ KK KK+ G+++   
Sbjct: 5   RLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAIN 64

Query: 202 XXXXXXXXXXXNFGIWLR 255
                      NFGIWLR
Sbjct: 65  EIFEKNPTTIKNFGIWLR 82


>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
          Length = 178

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 40/71 (56%), Positives = 50/71 (70%)
 Frame = +3

Query: 255 YESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVK 434
           Y+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQIIK   + A  C+R   K
Sbjct: 83  YQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTK 142

Query: 435 QFHNSTIRFPL 467
           QFHNS I+FPL
Sbjct: 143 QFHNSKIKFPL 153



 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 32/78 (41%), Positives = 53/78 (67%)
 Frame = +1

Query: 22  QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 201
           +  +Y+V+GR LP+E + +P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+++   
Sbjct: 5   RFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAIN 64

Query: 202 XXXXXXXXXXXNFGIWLR 255
                      NFGIWLR
Sbjct: 65  EIYEKNPTTIKNFGIWLR 82


>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
           similar to GB:CAA08791 from [Podocoryne carnea]
          Length = 178

 Score = 90.2 bits (214), Expect = 9e-19
 Identities = 39/71 (54%), Positives = 49/71 (69%)
 Frame = +3

Query: 255 YESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVK 434
           Y+SR+G HNMY+EYRD ++ G V Q Y +M +RHR R   IQIIK   + A  C+R   K
Sbjct: 83  YQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITK 142

Query: 435 QFHNSTIRFPL 467
           QFHNS I+FPL
Sbjct: 143 QFHNSKIKFPL 153



 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 31/78 (39%), Positives = 52/78 (66%)
 Frame = +1

Query: 22  QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 201
           +  +Y+V+GR LP+EN+  P +Y+M+++  + + AKS+FWYF+R+LKK KK+ G+++   
Sbjct: 5   RFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAIN 64

Query: 202 XXXXXXXXXXXNFGIWLR 255
                      N+GIWLR
Sbjct: 65  EIFEKNPTTIKNYGIWLR 82


>At3g57460.1 68416.m06397 expressed protein weak similarity to
           SP|O43847 Nardilysin precursor (EC 3.4.24.61)
           (N-arginine dibasic convertase) {Homo sapiens}
          Length = 356

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 429 VKQFHNSTIRFPLPKRVHHYKRLNTFATRGL 521
           +KQ HN T+ +P+   +HHY+  +     GL
Sbjct: 44  IKQGHNLTVSWPVTPSIHHYEEAHARWATGL 74


>At2g35200.1 68415.m04317 expressed protein
          Length = 201

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 100 IFSPDPIVAKSRFWYFLRQLKKFKKT 177
           +FSP P+ +K   WYF   +K F+++
Sbjct: 160 LFSPTPVTSKGNGWYFPSPIKVFRQS 185


>At3g43870.1 68416.m04696 hypothetical protein 
          Length = 187

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 158 SCLRKYQKRDLATIGSGEKILILYKGGLGSFSDGSLRPITSYSLNCPLAFI 6
           SC ++++  D+ TIG      +  KG +     G +R  T Y LN  + F+
Sbjct: 4   SCFKEFRVADILTIGFKLHPYLTLKGLIEMKRRGLIRDTTGYILNGGITFL 54


>At1g26870.1 68414.m03277 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to GB:AAD22369, NAM stands for No Apicla
           Meristem
          Length = 425

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = +1

Query: 13  AKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTT 180
           AKG   ++ +   +LPS +EP PP    R F  D  V+ +  W   R  KK   TT
Sbjct: 136 AKGVKTDWMMHEFRLPSLSEPSPP--SKRFF--DSPVSPNDSWAICRIFKKTNTTT 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,887,408
Number of Sequences: 28952
Number of extensions: 296203
Number of successful extensions: 814
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)