Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0674
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    27   3.0  
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    27   4.0  
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ...    27   4.0  
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi...    26   5.2  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   6.9  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   9.2  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   9.2  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    25   9.2  

>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 651 LRGYHKTSKQDLVELAALVYRARFGSDPSLL-AQISHLLKIL 773
           LRG+ + + Q+L  +A L  R    + PSL+ AQ+  +LK L
Sbjct: 295 LRGFFEDTDQNLKYIALLCLRKLANTHPSLVSAQLDIILKCL 336


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 115 DASGQPKQLPSSLFTQLYSIVGQLLHYVTVYFI 17
           DAS  P+  PS+    +  I+   LH + V++I
Sbjct: 303 DASTSPRSTPSASPRSITKIIASTLHLLEVFYI 335


>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 149 LVLSLKLGYRRRRQWPTKAAPILS 78
           L+L++KLG RR  +WP     +L+
Sbjct: 126 LILTIKLGIRRHVEWPVVFMGVLA 149


>SPAC1782.05 |||phosphotyrosyl phosphatase activator
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 425 FTNKLKPSLFFRFSLPVI 372
           F NKLKPS+  RF  P+I
Sbjct: 245 FLNKLKPSVSLRFHSPMI 262


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -1

Query: 708 KPMQQVQRGPALKSYDILSSTLEVLEENKKFDQHFYLYQEPC*SIAFS*RIFGSSFAFV 532
           K + Q +R   LK  D+L+   E LE   K     Y+ +E    +    R+F   FAF+
Sbjct: 730 KLLNQEERLLLLKRGDVLTFDTEELEAYGKTLYPLYITKEDIVCLEIDDRVFHYKFAFL 788


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = -1

Query: 252 TTYGAYILDPYFCVLNNRFKQSLAIG*GRVLRNSTSSFIKTWLQAKTPVANQSSSHPL-S 76
           TTY   + D     LNN   Q LAI     L+NS SS  +T  Q +T      +  PL +
Sbjct: 501 TTYEYILKDKQ--ELNNIRWQYLAIDEAHRLKNSESSLYETLSQFRTANRLLITGTPLQN 558

Query: 75  SLNCILLLVNCFIM 34
           +L  +  LVN F+M
Sbjct: 559 NLKELASLVN-FLM 571


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -1

Query: 159 RNSTSSFIKTWLQAKTPVANQSSSHPLSSLNCILLLVNC 43
           +NS+ + + +W+  KT         PL+  +C    V C
Sbjct: 44  KNSSPASVPSWIHEKTKAGKDRKRLPLACQSCRKKKVKC 82


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 549 YQIFFMKKLWINTVPGRDKNADQIFYFPQELPKYLRGYHKTSKQD 683
           Y    ++ ++I +VPG+ +  ++  +   +L K L+   K SK+D
Sbjct: 254 YDFSAIRAIFIGSVPGKFEGEEESSWGLGKLKKILKMLEKDSKKD 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,225,736
Number of Sequences: 5004
Number of extensions: 67093
Number of successful extensions: 204
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)