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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0674
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1509 - 34074206-34074398,34074506-34074777,34075411-340756...    33   0.19 
03_06_0135 + 31928838-31929698,31929783-31929932,31930795-319310...    30   1.8  
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199...    29   3.1  
10_08_0585 - 18998013-18998306,18998448-18998630,18999048-189990...    29   4.1  
08_01_0183 - 1537906-1539141                                           29   4.1  
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240...    29   4.1  

>04_04_1509 -
           34074206-34074398,34074506-34074777,34075411-34075608,
           34076092-34076187,34076318-34076500,34076597-34076799,
           34076887-34077013,34077098-34077292,34077400-34077540,
           34077669-34077812,34077876-34078040,34078776-34078976,
           34079049-34079195,34079275-34079427,34079731-34079833,
           34079954-34080069,34080168-34080349,34080442-34080541,
           34081200-34081527,34081605-34081834,34081979-34082110,
           34082787-34082859,34083274-34083338
          Length = 1248

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +2

Query: 11  LRDEIYCHIMKQLTNNRIQLSEERGWELLWLATGVFACSQVLMKELVEFLKTRPHPIAKD 190
           LRDE++  I KQ  NN  +    R WEL++L       S+ +   L E++    H    D
Sbjct: 149 LRDELFAQISKQTRNNPDRAWLIRAWELMYLCASSMPPSKDIGAYLSEYVHYIAHGATTD 208



 Score = 31.5 bits (68), Expect = 0.77
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 298 VYFPDDTDEAFEVDSSTKARDLCEQITGRLNLKNSDGFSLF 420
           V+F D+T E    D +T   D  E++ G + L     FSLF
Sbjct: 253 VFFLDETFEEITYDMATTVADAVEELAGIIKLSVYSSFSLF 293


>03_06_0135 +
           31928838-31929698,31929783-31929932,31930795-31931065,
           31931157-31931249,31931442-31931616,31931715-31931960,
           31932100-31932294,31932604-31932802
          Length = 729

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = -1

Query: 339 IHLESFISIVWEVYFV-IYLHTSMLNSFYPTTYGAYILDPYFCVLNNRFKQ--SLAIG*G 169
           +H    + I++E   + +Y       S YP +Y     D  F  LNNR KQ  S+ +   
Sbjct: 617 VHAPDTLPIIYERGLIGVYHDWCEPFSTYPRSYDLLHADHLFSRLNNRCKQPVSIVVEMD 676

Query: 168 RVLRNSTSSFIKTWLQAKTPV 106
           R+LR    + I+  L+   P+
Sbjct: 677 RILRPGGWAIIREKLEILDPL 697


>03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904,
            33319949-33320011,33320103-33320496,33320684-33320796,
            33320932-33321639,33321667-33323199,33323395-33323607,
            33323718-33324700,33324890-33325423,33325694-33325820,
            33326083-33326162,33327347-33327377,33327949-33328053,
            33328119-33328124,33328349-33328985,33329144-33329478,
            33330394-33331113
          Length = 2792

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = +1

Query: 331  EVDSSTKARDLCEQITGRLNL---KNSDGFSLFVKIADKVFSVPENYYFFDFVHELVEWM 501
            E +SS K R  C  +    NL   + +D  SLF++++   F    + +F +F+H +V+ M
Sbjct: 2370 ERESSCKRRFKCNCLLQGNNLYATQEADSHSLFLELSRLFFDGSPDLHFANFLH-MVKTM 2428

Query: 502  KQSGQFEE 525
              SG   E
Sbjct: 2429 ADSGTTAE 2436


>10_08_0585 -
           18998013-18998306,18998448-18998630,18999048-18999089,
           18999226-18999495,18999903-19000454,19000546-19000770,
           19001435-19001640,19001738-19001936,19002166-19002381,
           19002887-19002991,19003127-19003243,19003366-19003548,
           19004292-19004468,19004714-19004816,19005066-19005523
          Length = 1109

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 307 PDDTDEAFEVDSSTKARDLCEQITGRLNLKNSDGFSLFVKIADKV 441
           PDD D    V+S      +CE +T  +   +S G S++  I DKV
Sbjct: 666 PDDPDAEARVNSVRGLILVCETLTASVEHSSSFGDSMYSYIKDKV 710


>08_01_0183 - 1537906-1539141
          Length = 411

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2

Query: 158 GIQLVLSLKLGYRRRRQWPTKAAPILSLHSTVFY 57
           G  LVL L  G RRR++ P    P+    S VFY
Sbjct: 207 GDVLVLRLPAGRRRRQRRPASFEPLFDKASAVFY 240


>06_03_0715 -
           23823427-23823525,23823616-23823822,23823907-23824017,
           23824124-23824322,23824410-23824495,23824940-23825098,
           23825204-23825302,23825385-23826578,23826666-23826734,
           23828042-23828812
          Length = 997

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 537 MQMNYQIFFMKKLWINTVPGRDKNADQIFYFPQELPKYLRGYHKTSK 677
           M+M+  ++  + L  NT+P     A+ +   P ELPK + G  K SK
Sbjct: 592 MKMDEDVYIFRPLRFNTLPVVKIAAEPLN--PSELPKMVEGLRKISK 636


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,496,787
Number of Sequences: 37544
Number of extensions: 378552
Number of successful extensions: 887
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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