Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0674
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55874| Best HMM Match : MyTH4 (HMM E-Value=1.2e-05)                130   9e-31
SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   2e-08
SB_37820| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   3e-08
SB_27905| Best HMM Match : MyTH4 (HMM E-Value=0.014)                   46   3e-05
SB_14370| Best HMM Match : MyTH4 (HMM E-Value=9.3e-25)                 42   7e-04
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)              29   4.2  
SB_30301| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  

>SB_55874| Best HMM Match : MyTH4 (HMM E-Value=1.2e-05)
          Length = 293

 Score =  130 bits (315), Expect = 9e-31
 Identities = 57/86 (66%), Positives = 71/86 (82%)
 Frame = +1

Query: 256 VEAIQHRSMQIYHKVYFPDDTDEAFEVDSSTKARDLCEQITGRLNLKNSDGFSLFVKIAD 435
           VEAIQH++ QI+HKVYFPDD+D+AFEVDS TKA++ C  I  RL LK+++GFSLFVKI D
Sbjct: 67  VEAIQHQTTQIFHKVYFPDDSDQAFEVDSGTKAKEFCNIIAQRLGLKSAEGFSLFVKITD 126

Query: 436 KVFSVPENYYFFDFVHELVEWMKQSG 513
           KV SVPE  +FFDFV  L EW+K++G
Sbjct: 127 KVISVPEGDFFFDFVRHLTEWLKKAG 152



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
 Frame = +2

Query: 71  SEERGWELLWLATGVFACSQVLMKELVEFLKT--RPHPIAKDCLKRLFKTQKYGSRMYAP 244
           S +RGWELLWL TG+FACS VL++E+ +  ++     P+  DCL RL KT + G R Y P
Sbjct: 3   SFDRGWELLWLCTGIFACSAVLLREVNQIFRSWVSRQPLGHDCLARLQKTIRVGQRKYPP 62

Query: 245 YVV 253
           ++V
Sbjct: 63  HIV 65



 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 21/42 (50%), Positives = 28/42 (66%)
 Frame = +3

Query: 513 PVRGGSTQMQMNYQIFFMKKLWINTVPGRDKNADQIFYFPQE 638
           P + G T   + YQ+F MKKLW NTV G+D  AD IF++ Q+
Sbjct: 153 PTKDGRTP-NLTYQVFLMKKLWTNTVVGKDPAADCIFHYHQQ 193


>SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2143

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
 Frame = +2

Query: 11   LRDEIYCHIMKQLTNNRIQLSE--ERGWELLWLATGVFACSQVLMKELVEFL-------K 163
            L DE+YC ++KQ+T+N+    +   RGW LL + T    C + L   LV+FL       K
Sbjct: 1742 LCDEVYCQLVKQVTSNKSACEDSCSRGWRLLIIMTSYVTCDEFLKPYLVKFLQSTASDPK 1801

Query: 164  TRPHPIAKDCLKRLFKTQKYGSRMYAP 244
               H  A  C + L KT KYG R   P
Sbjct: 1802 REFHGAAAICEQNLMKTFKYGGRRTPP 1828


>SB_37820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +2

Query: 14  RDEIYCHIMKQLTNNRIQLSEERGWELLWLATGVFACSQVLMKELVEFLKTR-PHPIAKD 190
           RDEIYC + KQL NN    S  RGW L+ +  GVF  S   +  L  F+ T     +A+ 
Sbjct: 14  RDEIYCQLCKQLVNNPSMTSTRRGWILMGILCGVFPPSDQFLNYLKNFILTEATEHVAEF 73

Query: 191 CLKRLFKTQKYGSRMYAP 244
           C+ RL +T    +R   P
Sbjct: 74  CISRLRRTVDRTNRKQPP 91



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 15/39 (38%), Positives = 28/39 (71%)
 Frame = +1

Query: 331 EVDSSTKARDLCEQITGRLNLKNSDGFSLFVKIADKVFS 447
           EVD+++  ++LCE I  +L LK+  GFS+++   D++F+
Sbjct: 105 EVDANSTFKELCESIREKLGLKSIYGFSIYIAAVDQIFN 143


>SB_27905| Best HMM Match : MyTH4 (HMM E-Value=0.014)
          Length = 478

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 20/53 (37%), Positives = 34/53 (64%)
 Frame = +1

Query: 298 VYFPDDTDEAFEVDSSTKARDLCEQITGRLNLKNSDGFSLFVKIADKVFSVPE 456
           + F D T +    DS+T AR+LC Q+  +++L +  GFSL++ + DK  S+P+
Sbjct: 121 ITFMDGTTKTLLADSATTARELCTQLADKISLLDQFGFSLYIALFDKGRSLPK 173


>SB_14370| Best HMM Match : MyTH4 (HMM E-Value=9.3e-25)
          Length = 618

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +2

Query: 5   PALRDEIYCHIMKQLTNNRIQLSEERGWELLWLATGVFACSQVLMKELVEF 157
           P +RDEIYC +  Q+  N  + S E+ W L+ L    F  S  L   L++F
Sbjct: 488 PEVRDEIYCQLCNQVWGNPKESSNEKAWLLMALCMSSFMPSSTLFPHLLKF 538


>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 18/38 (47%), Positives = 23/38 (60%)
 Frame = +2

Query: 5    PALRDEIYCHIMKQLTNNRIQLSEERGWELLWLATGVF 118
            P +RDEIY  I KQ T+N    S  RGWEL+ +   +F
Sbjct: 1062 PLIRDEIYLQICKQTTDNGNSESLRRGWELMSICLTLF 1099


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 639  LPKYLRGYHKTSKQDLVELAALVYRARFGSDPSLLAQISH 758
            LP     +HK+    L+ L + +++AR  S PSL + + H
Sbjct: 1345 LPSLFSSFHKSRTPSLLSLFSSLHKARTTSLPSLFSSLPH 1384


>SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)
          Length = 2489

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 591  PGRDKNADQIFYFPQELPKYLRGYHKTSKQDLVELAALVYRARF 722
            P  +  ++ +F+ P E P++     + SK  L + AAL   +RF
Sbjct: 895  PAVNPMSNHLFHLPHETPRHTTHTPRVSKHPLFDFAALSESSRF 938


>SB_30301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 415 LFVKIADKVFSVPENYYFFDFVHELVEWMKQSGQFE 522
           LF+ +   +    E     DF HE +EW+K+ G F+
Sbjct: 19  LFLTVCAVIAGADEWQEIEDFGHERLEWLKKYGDFD 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,875,818
Number of Sequences: 59808
Number of extensions: 450085
Number of successful extensions: 1145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)