Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0674
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.7  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 605 FISTRNRVNP*LFHEEYLVVHLHLC 531
           F+ TR ++ P  FH  Y +++  LC
Sbjct: 28  FLRTRTKLQPTYFHHTY-IIYESLC 51


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 605 FISTRNRVNP*LFHEEYLVVHLHLC 531
           F+ TR ++ P  FH  Y +++  LC
Sbjct: 28  FLRTRTKLQPTYFHHTY-IIYESLC 51


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 702 MQQVQRGPALKSYDILSSTLEVLEENKKFDQH 607
           M    RG   K+Y +  S ++      KFD+H
Sbjct: 362 MANYDRGVFYKNYLLNVSFIDAAGSEVKFDEH 393


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 702 MQQVQRGPALKSYDILSSTLEVLEENKKFDQH 607
           M    RG   K+Y +  S ++      KFD+H
Sbjct: 452 MANYDRGVFYKNYLLNVSFIDAAGSEVKFDEH 483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,933
Number of Sequences: 438
Number of extensions: 4079
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)