Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0674
         (777 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65930.2 68418.m08300 kinesin-like calmodulin-binding protein...    33   0.21 
At5g65930.1 68418.m08299 kinesin-like calmodulin-binding protein...    31   1.1  
At4g38320.1 68417.m05416 expressed protein contains Pfam domain,...    30   2.0  
At4g37680.1 68417.m05329 expressed protein contains Pfam domain,...    30   2.0  
At2g07678.1 68415.m00915 hypothetical protein                          29   2.6  
At1g52310.1 68414.m05902 protein kinase family protein / C-type ...    29   4.5  
At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1...    28   6.0  
At3g03580.1 68416.m00361 pentatricopeptide (PPR) repeat-containi...    28   6.0  
At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa...    28   7.9  
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P...    28   7.9  

>At5g65930.2 68418.m08300 kinesin-like calmodulin-binding protein
           (ZWICHEL) identical to kinesin-like protein GI:2224925
           from [Arabidopsis thaliana]
          Length = 1260

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 298 VYFPDDTDEAFEVDSSTKARDLCEQITGRLNLKNSDGFSLF 420
           V+F D+T E    D +T   D  E++ G + L     FSLF
Sbjct: 283 VFFLDETFEEISYDMATTVSDAVEELAGTIKLSAFSSFSLF 323



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +2

Query: 11  LRDEIYCHIMKQLTNNRIQLSEERGWELLWLATGVFACSQVLMKELVEFLKTRPHPIAKD 190
           LRDE++  I KQ  +N  +    + WEL++L     A S    K++  +L    H +A D
Sbjct: 179 LRDELFAQISKQTRHNPDRQYLIKAWELMYLC----ASSMPPSKDIGGYLSEYIHNVAHD 234


>At5g65930.1 68418.m08299 kinesin-like calmodulin-binding protein
           (ZWICHEL) identical to kinesin-like protein GI:2224925
           from [Arabidopsis thaliana]
          Length = 1259

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +2

Query: 11  LRDEIYCHIMKQLTNNRIQLSEERGWELLWLATGVFACSQVLMKELVEFLKTRPHPIAKD 190
           LRDE++  I KQ  +N  +    + WEL++L     A S    K++  +L    H +A D
Sbjct: 179 LRDELFAQISKQTRHNPDRQYLIKAWELMYLC----ASSMPPSKDIGGYLSEYIHNVAHD 234



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 298 VYFPDDTDEAFEVDSSTKARDLCEQITGRLNLKNSDGFSLF 420
           V+F D+T E    D +T   D  E + G + L     FSLF
Sbjct: 283 VFFLDETFEEISYDMATTVSDAVE-LAGTIKLSAFSSFSLF 322


>At4g38320.1 68417.m05416 expressed protein contains Pfam domain,
           PF03006: Uncharacterised protein family (Hly-III /
           UPF0073)
          Length = 374

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 264 SFYPTTYGAYILDPYFCVLNNRFKQSLAI 178
           SFYP  Y +++ DP+FC L   F   L I
Sbjct: 238 SFYPPVYYSFMCDPFFCNLYLGFITILGI 266


>At4g37680.1 68417.m05329 expressed protein contains Pfam domain,
           PF03006: Uncharacterised protein family (Hly-III /
           UPF0073)
          Length = 385

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 264 SFYPTTYGAYILDPYFCVLNNRFKQSLAI 178
           SFYP  Y +++ DP+FC L   F   L I
Sbjct: 238 SFYPPVYYSFMCDPFFCNLYLGFITILGI 266


>At2g07678.1 68415.m00915 hypothetical protein
          Length = 245

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -1

Query: 294 VIYLHTSMLNSFYPTTYGAYILDPYFCVLNNRFKQSLAIG*GRVLRNSTSSF-IKTWLQA 118
           +++ +   LN  + + YG+   +    +L +RFKQS+    G    ++T  F IK  L  
Sbjct: 47  ILHSYIKNLNLDFTSPYGSTGNNEVLSILRSRFKQSIFPSSGLKCLDTTGDFLIKNVLHK 106

Query: 117 KTPVANQSSSHPLSS 73
           +     ++ S+ LSS
Sbjct: 107 RYESVQKNISNALSS 121


>At1g52310.1 68414.m05902 protein kinase family protein / C-type
           lectin domain-containing protein contains protein kinase
           domain, Pfam:PF00069, PF00059 Lectin C-type domain
          Length = 552

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 171 GRVLRNSTSSFIKTWLQAKTPVANQS 94
           GR + +STS F  +W   KTP  NQS
Sbjct: 114 GRSMNSSTSGFRWSWSDPKTPQWNQS 139


>At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1
            family protein similar to 13S condensin XCAP-D2 subunit
            [Xenopus laevis] GI:3764087; contains Pfam profile
            PF04594: Non-SMC condensin subunit, XCAP-D2/Cnd1
          Length = 1439

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/50 (22%), Positives = 29/50 (58%)
 Frame = +2

Query: 65   QLSEERGWELLWLATGVFACSQVLMKELVEFLKTRPHPIAKDCLKRLFKT 214
            +L++ + WE +  +  +   ++  +K+L+E  K+  H +A+D +   F++
Sbjct: 1156 KLADGKQWEYISYSLSLLTFTEKGIKKLIESFKSYEHALAEDLVTENFRS 1205


>At3g03580.1 68416.m00361 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 882

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 275 EVCRYITKYTSQTILMKLSRWIHLQKRGTCASK 373
           EV + I+K   + IL++ +   HL K GTC+ K
Sbjct: 847 EVTKLISKIVGREILVRDANRFHLFKDGTCSCK 879


>At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 378

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 603 KNADQIFYFPQELPKYLRGYH 665
           +N  Q  Y+PQ+ P Y  GYH
Sbjct: 81  QNYHQNQYYPQQAPPYFTGYH 101


>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain; similar to At3g24380, At5g36840,
            At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
            At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
            At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
            At1g25886, At4g03300
          Length = 1312

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = -1

Query: 552  GSSFAFVLNLLELAALFHPFN*FMNKVEEVIVFWDRKHLVRYFYKQTKTVAILQI*P-SG 376
            G   ++ +  LEL A  HPF+      E  +VF+ +K+ V   Y+  K  A+ ++   S 
Sbjct: 1062 GDCGSYTMKFLELLAFGHPFSELTTIREADMVFYRQKYSVD-IYEHGKREAVKKLLTISD 1120

Query: 375  YLLAQV 358
            YL++ +
Sbjct: 1121 YLISNM 1126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,303,787
Number of Sequences: 28952
Number of extensions: 326576
Number of successful extensions: 822
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)