Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0673
         (646 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    25   0.53 
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   2.2  
AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    22   3.8  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +2

Query: 35  FFTPSNSRQA---KDLVSVLQEANQIISPQL 118
           FF+P   R     K LV V +  NQ+ +PQL
Sbjct: 73  FFSPKIKRMVLLHKTLVRVAKSLNQVFAPQL 103


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 236 YSCQNCFRV*KSRHHLVH 183
           + C  C    + RHHLVH
Sbjct: 247 FECDKCRGRFRRRHHLVH 264


>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 326 YITRIHPLRNANKNLI 279
           Y+   HPL  +NKN I
Sbjct: 45  YVKHFHPLALSNKNAI 60


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,242
Number of Sequences: 336
Number of extensions: 2858
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)