Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0673
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 55 8e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 39 5e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 37 0.003
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 32 0.081
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 29 0.57
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 27 2.3
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 27 2.3
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 25 7.1
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces... 25 9.3
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 25 9.3
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.3
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 55.2 bits (127), Expect = 8e-09
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +2
Query: 2 GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 130
GR+ +KGT+Y +FT N++QA++LVS+L EA Q I P+L+ MA
Sbjct: 461 GRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMA 503
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 39.1 bits (87), Expect = 5e-04
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +2
Query: 2 GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQII 106
GR+ +KGT+ FFTP + A +LV+VL++A Q I
Sbjct: 508 GRANTKGTAITFFTPQDKSHAGELVNVLRQAKQDI 542
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +2
Query: 2 GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 130
GR+ + G + AFF +N AK+L+ +LQEANQ L +MA
Sbjct: 522 GRAGNTGQAVAFFNRNNKGIAKELIELLQEANQECPSFLIAMA 564
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 31.9 bits (69), Expect = 0.081
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 2 GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 136
GR+ G + F TP + A D+ L+ + Q + +LQ++A +
Sbjct: 760 GRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQTLASQ 804
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 29.1 bits (62), Expect = 0.57
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 408 DPTFYR*HYLYYVKTVIFFYCDSTQDLQNSAFLLEIFQVE*MSSNSCR 551
D T+ + V+TV+ F C+++ +L SA LEI+ + SCR
Sbjct: 374 DTTYPNIKITHTVRTVLRFSCENSPELMGSAKYLEIYIDSPVRLLSCR 421
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 486 LQNSAFLLEIFQVE*MSSNSCRILLIFRALSRHSTLVTF 602
L+NSA LLE F+ E + S +C L AL+ +T + F
Sbjct: 735 LENSALLLEKFEEEDVDSTNCN-LNTMEALASVNTALQF 772
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +3
Query: 15 QKEHHMLSLPLQIPVKPKIWYLFYKKLIRLLAHNCSRWP 131
+KE ++S+P + +KPK Y+KL++++ + +P
Sbjct: 379 EKEKELISVPSKSDIKPK----HYRKLLKIIEKRINMYP 413
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 568 LNINKILHEFDDIYSTWKISSKNALFCKSW 479
L+ N + HE + + K ++KN + CK W
Sbjct: 200 LDSNSLTHEKIEFATITKDTTKNKMVCKIW 229
>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 408
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 537 TTFILLGKFQVRMHYFANLG*NHNKKISQF*HNIN 433
T +LG F ++ A+ NH KKISQ IN
Sbjct: 333 TVLSMLGLFTEQVFSVADEPNNHRKKISQVLRKIN 367
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 6 VQNQKEHHMLSLPLQIPVKPKIWYLF 83
V ++ H++ SL +PV+P W++F
Sbjct: 531 VSHELIHNLYSLMCLVPVEPLRWWVF 556
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 11 KSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISP 112
K + F PSNS KDL +V ++ N++ SP
Sbjct: 263 KPDSNNCGFLLPSNSTSIKDLKNV-KKGNRLNSP 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,409,979
Number of Sequences: 5004
Number of extensions: 44959
Number of successful extensions: 93
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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