Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0673
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826...    51   9e-07
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524...    47   1e-05
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249...    47   1e-05
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371...    46   3e-05
07_02_0023 - 11918735-11918827,11919139-11919231,11919320-119194...    42   6e-04
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204...    41   7e-04
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973...    36   0.028
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553...    36   0.036
08_01_0397 - 3509186-3510291,3510322-3512335                           35   0.064
06_03_0674 + 23422004-23422552,23423295-23423369,23424360-234244...    33   0.15 
03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009...    32   0.34 

>01_06_1758 -
           39681942-39682030,39682115-39682345,39682643-39682679,
           39683604-39683835,39683937-39684022,39684126-39684218,
           39684302-39684465,39684541-39684702,39684783-39684962,
           39685079-39685515,39685614-39685669
          Length = 588

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 20/43 (46%), Positives = 35/43 (81%)
 Frame = +2

Query: 2   GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 130
           GR+ + GT++ FFT SN++ +++LV +L+EA Q+++P L+SMA
Sbjct: 510 GRAGASGTAFTFFTLSNAKFSRNLVKILREAGQVVNPALESMA 552


>01_01_0682 -
           5244805-5244919,5246468-5246613,5246813-5246994,
           5247069-5247295,5247382-5247467,5247564-5247656,
           5247964-5248118,5248407-5248490,5248589-5248768,
           5249587-5249828,5249927-5249982
          Length = 521

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 19/33 (57%), Positives = 28/33 (84%)
 Frame = +2

Query: 2   GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQ 100
           GR+ +KGT+Y FFT +N+R AKDL+++L+EA Q
Sbjct: 402 GRAGAKGTAYTFFTAANARFAKDLINILEEAGQ 434


>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
            27125387-27125656,27126027-27126377,27126480-27126757,
            27126887-27128330
          Length = 1398

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 22/45 (48%), Positives = 30/45 (66%)
 Frame = +2

Query: 2    GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 136
            GR+ + G SY FF+  + + A DLV VL+ ANQ + P+LQ MA R
Sbjct: 940  GRAGATGVSYTFFSEQDWKYAGDLVKVLEGANQHVPPELQEMAAR 984


>01_01_0509 -
           3713109-3713244,3713689-3713733,3713959-3714015,
           3714088-3714438,3714585-3714862,3714939-3715289,
           3715378-3715647,3716035-3716103,3716194-3716304,
           3716503-3716583,3716825-3716914,3717032-3717262
          Length = 689

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 20/45 (44%), Positives = 29/45 (64%)
 Frame = +2

Query: 2   GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 136
           GR+ + G +Y FF   +S+ A DLV +L+ ANQ +S QL+ M  R
Sbjct: 516 GRAGATGVAYTFFCDQDSKYASDLVKILEGANQSVSQQLRDMVSR 560


>07_02_0023 -
           11918735-11918827,11919139-11919231,11919320-11919484,
           11920234-11920327,11921012-11921136,11921228-11921313,
           11921786-11921864,11923777-11923857,11924153-11924260,
           11924870-11924994,11925110-11925530
          Length = 489

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = +2

Query: 2   GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQL 118
           GR+  KG ++ FFT  N   A +LV+VL+EA Q++ P L
Sbjct: 411 GRAGKKGVAHTFFTQENKGLAGELVNVLREAGQVVPPAL 449


>01_05_0292 +
           20518668-20519090,20519213-20519281,20520204-20520473,
           20520734-20521084,20521251-20521528,20522755-20523099,
           20523346-20523911,20525155-20525528
          Length = 891

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +2

Query: 2   GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 136
           GR+ + G +Y FF   +S+ A DL+ +L+ ANQ +   L  MA R
Sbjct: 486 GRAGATGVAYTFFCDQDSKYAADLIKILEGANQRVPRDLADMASR 530


>11_06_0300 +
           22095396-22096145,22096261-22096344,22097062-22097304,
           22098535-22098702,22098895-22099008,22099378-22099890
          Length = 623

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 2   GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 136
           GR+   G + AFF  +NS  A+ L  ++QE+NQ +   L   A R
Sbjct: 508 GRAGKSGLATAFFNENNSSMARSLAELMQESNQEVPAWLSRYAAR 552


>07_01_0725 -
           5532803-5533324,5533631-5533657,5534285-5534398,
           5534564-5534731,5535951-5536193,5537178-5537261,
           5537357-5538117,5539637-5539730,5540633-5540899,
           5541311-5541316,5542538-5542657
          Length = 801

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +2

Query: 2   GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 136
           GR+   G + AFF  SN+  A+ L  ++QEANQ +   L+  A R
Sbjct: 683 GRAGKSGLATAFFNESNTPLARPLSELMQEANQEVPQWLERYAAR 727


>08_01_0397 - 3509186-3510291,3510322-3512335
          Length = 1039

 Score = 34.7 bits (76), Expect = 0.064
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 2   GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 136
           GR+  KG +  F +    R A DLV  L+ + Q +   L+ +ADR
Sbjct: 753 GRAGRKGFAVTFISEEEERYAPDLVKALELSEQAVPEDLKGLADR 797


>06_03_0674 +
           23422004-23422552,23423295-23423369,23424360-23424443,
           23424749-23424991,23425348-23425515,23425608-23425727,
           23426372-23427016
          Length = 627

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +2

Query: 2   GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 136
           GR+   G++ AFFT S+   AK L+ ++ EA Q +   L   A+R
Sbjct: 468 GRAGKAGSATAFFTESDHSLAKGLLELMTEAKQDVPDWLVQYAER 512


>03_06_0365 -
           33399422-33399925,33400470-33400583,33400762-33400929,
           33401305-33401547,33402148-33402231,33402323-33403098,
           33404423-33404636
          Length = 700

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 2   GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 136
           GR+   G + AFF   N   A+ L  ++QEANQ +   L+  + R
Sbjct: 588 GRAGKSGLATAFFNEGNLSLARPLCELMQEANQEVPQWLERYSAR 632


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,631,033
Number of Sequences: 37544
Number of extensions: 259580
Number of successful extensions: 529
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)