Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0673
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)                  55   4e-08
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.065
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 

>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
          Length = 690

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 25/43 (58%), Positives = 34/43 (79%)
 Frame = +2

Query: 5   RSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 133
           RS   GTSY FFT +N++QAK+LVSVLQEA Q ++P+L ++ D
Sbjct: 379 RSDRTGTSYTFFTVNNAKQAKELVSVLQEAKQHVNPKLLNLQD 421


>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 2    GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 130
            GR    G + +FF   N   AK+L+ +L+E+ Q I   L+SMA
Sbjct: 1192 GRVGHTGLATSFFNHKNKNVAKELMDILEESKQEIPSWLESMA 1234


>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 2   GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 136
           GR+   GTS  F +  + R A  L+ ++ +ANQ +   L  MA R
Sbjct: 134 GRAGRSGTSLTFISREDWRSAHKLIKIMVQANQEVPDFLHDMAKR 178


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 251  CPPFGYSCQNCFRV*KSRHH 192
            CP F Y C+NCFRV +S  H
Sbjct: 1202 CPDFDY-CENCFRVRRSHRH 1220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,361,935
Number of Sequences: 59808
Number of extensions: 316850
Number of successful extensions: 553
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)