Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0673
(646 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 55 4e-08
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 47 1e-05
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 45 5e-05
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 45 5e-05
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 45 5e-05
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 45 5e-05
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 42 4e-04
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 41 6e-04
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 38 0.008
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 36 0.017
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 36 0.017
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 35 0.053
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 32 0.28
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 29 2.6
At4g02000.1 68417.m00269 expressed protein low similarity to zin... 28 4.6
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 55.2 bits (127), Expect = 4e-08
Identities = 24/42 (57%), Positives = 34/42 (80%)
Frame = +2
Query: 2 GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSM 127
GR+ +KGT+Y FFT +N+R AK+L ++LQEA Q +SP+L SM
Sbjct: 436 GRAGAKGTAYTFFTVANARFAKELTNILQEAGQKVSPELASM 477
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/42 (42%), Positives = 31/42 (73%)
Frame = +2
Query: 2 GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSM 127
GR+ +KG ++ FFT N++ A++LV +LQEA Q++ P L ++
Sbjct: 502 GRAGAKGMAFTFFTHDNAKFARELVKILQEAGQVVPPTLSAL 543
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 44.8 bits (101), Expect = 5e-05
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +2
Query: 2 GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 136
GR+ + G +Y FF +++ A DL+ +L+ ANQ + PQ++ MA R
Sbjct: 565 GRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREMATR 609
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 44.8 bits (101), Expect = 5e-05
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +2
Query: 2 GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 136
GR+ + G ++ FF +S+ A DL+ +L+ ANQ + PQ++ MA R
Sbjct: 494 GRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMATR 538
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 44.8 bits (101), Expect = 5e-05
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +2
Query: 2 GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 136
GR+ + G ++ FF +S+ A DL+ +L+ ANQ + PQ++ MA R
Sbjct: 494 GRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMATR 538
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 44.8 bits (101), Expect = 5e-05
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +2
Query: 2 GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 136
GR+ + G ++ FF +S+ A DL+ +L+ ANQ + PQ++ MA R
Sbjct: 494 GRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMATR 538
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +2
Query: 2 GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 136
GR+ + G ++ FFT + + A DL+ VL+ ANQ + PQ++ +A R
Sbjct: 771 GRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIAMR 815
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +2
Query: 2 GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQL 118
GR+ KG ++ FFTP N A +LV+VL+EA Q++ L
Sbjct: 458 GRAGKKGVAHTFFTPLNKGLAGELVNVLREAGQVVPADL 496
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 2 GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 136
GR+ + G + AFF +N+ AK L ++QEANQ + L A R
Sbjct: 497 GRAGNSGLATAFFNDNNTTMAKPLAELMQEANQEVPDWLTRYASR 541
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 36.3 bits (80), Expect = 0.017
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 2 GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 136
GR+ G + AFF +N++ A+ L ++QEANQ + L A R
Sbjct: 500 GRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWLTRYASR 544
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 36.3 bits (80), Expect = 0.017
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 2 GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 136
GR+ G + AFF +N++ A+ L ++QEANQ + L A R
Sbjct: 500 GRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWLTRYASR 544
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 34.7 bits (76), Expect = 0.053
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 2 GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 136
GR+ G + AFF N+ A+ L ++QEANQ + L A R
Sbjct: 510 GRAGKSGLATAFFNDGNTSLARPLAELMQEANQEVPEWLTRYASR 554
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 2 GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 133
GR+ KG + F + +++ A DLV L+ + Q + L+++AD
Sbjct: 868 GRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDLKALAD 911
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +2
Query: 2 GRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 133
GR+ KG + F + +++ A DLV L+ + Q + ++++A+
Sbjct: 706 GRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDVKAVAE 749
>At4g02000.1 68417.m00269 expressed protein low similarity to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 314
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -3
Query: 182 LRRICSCSTRRHHHRNGRP 126
LRRICS R HHRN P
Sbjct: 121 LRRICSSCFRMTHHRNSCP 139
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,210,370
Number of Sequences: 28952
Number of extensions: 220263
Number of successful extensions: 410
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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