Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0672
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967...    30   0.99 
02_03_0303 - 17506392-17506399,17507055-17507286,17507390-175074...    28   4.0  
01_01_1023 - 8070122-8070808                                           28   4.0  
12_02_0131 - 14030721-14030774,14030848-14031027,14032050-140323...    27   7.0  

>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
            16196822-16197001,16197090-16197371,16197471-16199141,
            16199257-16199463,16199566-16199700,16199792-16200082,
            16200403-16200621,16200876-16201034,16201120-16201181,
            16201257-16201383,16201460-16201693,16201777-16202003,
            16202163-16202257,16202341-16202468,16202574-16202594,
            16202765-16202921,16203007-16203075,16203228-16203341,
            16203415-16203491,16203576-16203688,16204432-16204507,
            16204592-16204756,16204825-16204952,16205049-16205130,
            16205426-16205548,16205633-16205860,16205933-16206034,
            16206144-16206341,16206581-16206760,16206868-16207020,
            16207690-16207797,16208201-16208355,16208786-16208912,
            16209825-16209914,16209986-16210127,16210303-16210379,
            16210467-16210582,16210638-16210773,16211130-16211198,
            16211279-16211361,16211655-16211720,16211788-16211974,
            16212054-16213547,16213635-16214165,16214234-16214363,
            16214407-16215878,16216359-16216364,16216750-16217055,
            16217364-16217468,16217577-16217772,16217862-16217929,
            16218853-16220631,16221026-16221151,16221604-16221780,
            16221997-16222128,16223461-16223498,16223710-16223788,
            16224175-16224284,16224787-16224935,16225027-16225197,
            16225281-16225552,16226355-16226442,16227942-16228369
          Length = 5157

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -2

Query: 410  INLDFVWLN-CTHELRPKCYCYFLYIVFLTSPNFHPVVQSPAGCVRNV 270
            + L  +W N C H L+P C  +  Y   L   + HP+  S   C R +
Sbjct: 2427 LKLYAIWFNWCNHLLQPYCNFFENYGNILKKESDHPIWHSILECYREI 2474


>02_03_0303 -
           17506392-17506399,17507055-17507286,17507390-17507461,
           17507561-17508586,17509194-17509448,17510483-17510962
          Length = 690

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 1   VAAVSAVEKEDFDSFRRSTLNLGVIGNQDRLLRSEN 108
           VA++ ++  E FD FR+S L++GV+     LL  EN
Sbjct: 409 VASIVSILSE-FDMFRKSVLDIGVVTLLCNLLNFEN 443


>01_01_1023 - 8070122-8070808
          Length = 228

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = -2

Query: 263 GKGEPSPP*VSLIEPDCDAPTSLARMALMRVPVGANKVN 147
           G+G P PP V++I  +C  P+++ R  ++ VP G + V+
Sbjct: 33  GRGAPKPPPVAVIAHEC--PSAM-RALVVEVPAGRDVVS 68


>12_02_0131 -
           14030721-14030774,14030848-14031027,14032050-14032303,
           14034414-14034488,14034682-14034910
          Length = 263

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 308 PVVQSPAGCVRNVKSGKGEPS 246
           PV   P GC    K+GKG PS
Sbjct: 76  PVKALPRGCGNRAKNGKGNPS 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,131,106
Number of Sequences: 37544
Number of extensions: 263723
Number of successful extensions: 470
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)