Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0672
         (525 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat...    28   4.4  
At3g15850.1 68416.m02005 fatty acid desaturase family protein si...    27   5.8  
At1g77640.1 68414.m09039 AP2 domain-containing transcription fac...    27   5.8  
At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to ...    27   5.8  
At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to ...    27   7.7  
At1g11440.1 68414.m01314 expressed protein                             27   7.7  

>At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon
            catalytic subunit, putative similar to SP|Q07864 DNA
            polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA
            polymerase II subunit A) {Homo sapiens}; contains Pfam
            profiles: PF03175 DNA polymerase type B, organellar and
            viral, PF00136 DNA polymerase family B, PF03104 DNA
            polymerase family B, exonuclease domain
          Length = 2271

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 123  RSTDEILTSQKSILVSDNP*VQGRSPKG 40
            +  D+I++  K I VSD   V G++PKG
Sbjct: 2025 KKVDDIMSHMKEINVSDASRVSGQAPKG 2052


>At3g15850.1 68416.m02005 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 371

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 108 FRPCFYGVIVGSPIDFVCAYRYSHQ 182
           F  C    + G+PID+V  +RY HQ
Sbjct: 166 FAYCGAQALQGNPIDWVSTHRYHHQ 190


>At1g77640.1 68414.m09039 AP2 domain-containing transcription
           factor, putative Similar to DREB1A (GP:3660548)
           [Arabidopsis thaliana]
          Length = 244

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = +3

Query: 159 CAYRYSHQRHTR*RSWGITVRFDQAYSRRTRFTFAAFDITNAAGRGLNYRVEIWGR*EHN 338
           C  +    +  R RSWG  V   +A +++TR    ++    AA R  +  +      + N
Sbjct: 36  CKNKIKKYKGVRMRSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPKAN 95

Query: 339 VKKITITFRSKFMCTV 386
           +    IT  S F+  +
Sbjct: 96  LNFPNITTTSPFLMNI 111


>At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to
           delta 9 acyl-lipid desaturase (ADS1) GB:BAA25180
           GI:2970034 from [Arabidopsis thaliana]
          Length = 305

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 108 FRPCFYGVIVGSPIDFVCAYRYSHQ 182
           F  C    I G PID+V  +RY HQ
Sbjct: 101 FAYCGLLAIQGDPIDWVSTHRYHHQ 125


>At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to
           delta 9 acyl-lipid desaturase (ADS2) GI:2970036 from
           [Arabidopsis thaliana]
          Length = 307

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 117 CFYGVIVGSPIDFVCAYRYSHQ 182
           C    I G PID+V  +RY HQ
Sbjct: 106 CALLAIQGDPIDWVSTHRYHHQ 127


>At1g11440.1 68414.m01314 expressed protein
          Length = 363

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 5/103 (4%)
 Frame = -2

Query: 485 NALSDNNISQENISIYIDLTVRSL*INLDFVW---LNCTHELRPK--CYCYFLYIVFLTS 321
           N  + N    E  S Y+  +V ++       +   L  T+E  P+   YC     +    
Sbjct: 69  NCYNWNGSESETTSAYVAYSVSTMSEPKHLFYDPNLYTTYESPPQFSIYCSVASALDFNE 128

Query: 320 PNFHPVVQSPAGCVRNVKSGKGEPSPP*VSLIEPDCDAPTSLA 192
           P F     +P G   +V +  G+P PP V    P   AP + A
Sbjct: 129 PEFDEYDPTPYGGGYDVVATYGKPLPPSVETCYPCSTAPHAKA 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,810,644
Number of Sequences: 28952
Number of extensions: 218111
Number of successful extensions: 434
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)