Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0671
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 29 0.48
SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces pom... 29 0.84
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.1
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 28 1.1
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 1.9
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 27 2.6
SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc... 27 2.6
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 27 3.4
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.4
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 3.4
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 29.5 bits (63), Expect = 0.48
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -1
Query: 263 YDSGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPAT 84
+ S P+ +G+N + P GSN T A + + +S +G +SM P T
Sbjct: 136 FPSVPSSLGSNHQFITTPPVNGSNEPTSAQTNHIITANSSPSGNAGSNASASMSVPPPLT 195
Query: 83 P 81
P
Sbjct: 196 P 196
>SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 28.7 bits (61), Expect = 0.84
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -1
Query: 314 DLHERSAVSNGGKRRVVYDSGPTEIGTNSSTMAG 213
+L + A+S G RV++D+G T+I + S+T+ G
Sbjct: 153 ELLQAQAMSLGLCARVIHDAGRTQIASGSATVLG 186
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = -1
Query: 257 SGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPATPG 78
S PT + SST++ + S+ + + M S+SS + PT+ + S + P++
Sbjct: 298 SSPT---STSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSS 354
Query: 77 FT 72
F+
Sbjct: 355 FS 356
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Frame = -1
Query: 458 LGDGAIDNNHGFSNDFGFVNDNHGLRDNGIDTGSGDNRGRA-SLVDVQNDLHERSAVSNG 282
LG +NN+ SN + N+N G + S +G A S ++ + + +N
Sbjct: 557 LGSSGNNNNNNNSNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSGNSNKQNYNNN 616
Query: 281 GKRRVVYDSGPTEIGTNSSTMAGPTEIGSNSLTMA 177
+ ++ N+S+ G ++ GS L A
Sbjct: 617 NNQNYGNNNNQNYNNNNNSSQGGNSQGGSGLLGQA 651
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -1
Query: 494 GSNGSNVSNLDRLGDGAIDNNHGFSNDFGFVNDNHGLR-DNGIDTGSGDNRGRASLVDVQ 318
GSNG+ ++ LD ID +GF + N R + + G + R L D+Q
Sbjct: 322 GSNGNGITALDSTDSEEIDIMNGFDEERDSGGTNMVSRSETCYNDGQRYDELRRELADIQ 381
Query: 317 ND 312
N+
Sbjct: 382 NE 383
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 380 DNGIDTGSGDNRGRASLVDVQNDLHERSAVSNGGKRRVVYDSGPTEI 240
D G DT G N +D D++E S G KR++ Y++GP +
Sbjct: 448 DEGDDTLYGTNDAE---MDDMLDIYETDE-SVGSKRKIAYENGPLRL 490
>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
Nse4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -1
Query: 359 SGDNRGRASLVDVQNDLHERSAVSNGGKRRVVYDSGPTEIGTNSSTMAG 213
+G+ R ++D+ DL+E K ++ P E TNS+T G
Sbjct: 252 AGEIRNIQLVLDMTMDLYENIIKEYNIKESIIPTRAPVETSTNSNTWYG 300
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -1
Query: 242 IGTNSSTMAGPTEIG--SNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPATPGFTR 69
+ T SST A + N L P++ N SM+ +G + P+ PGF+R
Sbjct: 13 LNTLSSTFASDNNLRRKENFLKSRYPSKFDLNVSMLTKSDDVGKTPFSIFDSPSNPGFSR 72
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +3
Query: 261 VDNPPLAPVADSTPLVQIILNINQASSAPIVPGP 362
V PP+APVA P V + AP VP P
Sbjct: 604 VPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQP 637
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 323 VQNDLHERSAVSNGGKRRVVYDSGPTEIGTNSST 222
+ N+L RS+ +GGK R+ DS +SS+
Sbjct: 3 LSNELFHRSSKDHGGKSRICLDSSEDTYPPHSSS 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,161,151
Number of Sequences: 5004
Number of extensions: 41320
Number of successful extensions: 160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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