Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0671
(689 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18810.1 68416.m02389 protein kinase family protein contains ... 33 0.24
At2g35350.1 68415.m04334 protein phosphatase 2C family protein /... 32 0.31
At1g70740.1 68414.m08154 protein kinase family protein contains ... 31 0.95
At4g34300.1 68417.m04875 glycine-rich protein similar to auxin r... 29 2.2
At2g28670.1 68415.m03485 disease resistance-responsive family pr... 29 2.9
At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding ... 29 3.8
At3g29080.1 68416.m03641 hypothetical protein 29 3.8
At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4)... 29 3.8
At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4)... 29 3.8
At5g62940.1 68418.m07897 Dof-type zinc finger domain-containing ... 28 6.7
At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family... 28 6.7
At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ... 28 6.7
At1g29170.1 68414.m03569 expressed protein ; expression supporte... 28 6.7
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 27 8.9
At1g75520.1 68414.m08776 lateral root primordium (LRP) protein-r... 27 8.9
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 32.7 bits (71), Expect = 0.24
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -1
Query: 488 NGSNVSNLDRLGDGAIDNNHGFSNDFGFV-NDNHGLRDNGIDTGSGDNRGRASLVDVQND 312
N +N +N + G+ DNN+G + D N+N+G +NG D +N G + + QN+
Sbjct: 79 NNNNDNNNNNNGNNNNDNNNGNNKDNNNNGNNNNGNNNNGNDNNGNNNNGNNNDNNNQNN 138
>At2g35350.1 68415.m04334 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2c
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain
Length = 783
Score = 32.3 bits (70), Expect = 0.31
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = -1
Query: 371 IDTGSGDNRGRASLVDVQNDLHERSAVSNGGKRRVVYDSGPTEIGTNSSTMAGPTEIGSN 192
+ + +++ L D+ +D E S GG RR V ++ E GT SS A P + G +
Sbjct: 107 VSANTSNSKTVLQLEDIYDDATESSF--GGGVRRSVVNANGFE-GT-SSFSALPLQPGPD 162
Query: 191 --SLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPATP 81
L M+GP E G+ S + P ++S+ G + P
Sbjct: 163 RSGLFMSGPIERGATSGPLDPPAGEISRSNSAGVHFSAP 201
>At1g70740.1 68414.m08154 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 425
Score = 30.7 bits (66), Expect = 0.95
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -1
Query: 278 KRRVVYDSGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSS 108
+RR SG +GT S+T + GSN T G G+ +S A + T+S+
Sbjct: 353 RRRTQRPSGAASLGTLSTTGSSTDSFGSNLNTNTGTGVRGTPASSKASTRSNATRSA 409
>At4g34300.1 68417.m04875 glycine-rich protein similar to auxin
response factor 30 (GI:20145855) {Arabidopsis thaliana}
Length = 313
Score = 29.5 bits (63), Expect = 2.2
Identities = 36/132 (27%), Positives = 55/132 (41%)
Frame = -1
Query: 500 WLGSNGSNVSNLDRLGDGAIDNNHGFSNDFGFVNDNHGLRDNGIDTGSGDNRGRASLVDV 321
W S+GSN S+ G G+ N H ++ + G NG +GS + S +
Sbjct: 81 WGSSSGSNHSS----GTGSTHNGHSSGSNH---SSGTGSTHNGHSSGSNHSSSTGSTHNN 133
Query: 320 QNDLHERSAVSNGGKRRVVYDSGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMM 141
+ S++ G + SG +N S++AGPT G +S GSN S +
Sbjct: 134 HSSGSNHSSIV--GSTHKNHGSG-----SNHSSIAGPTHNGHSS---------GSNHSSI 177
Query: 140 AGPTAIGTKSSM 105
G T T S+
Sbjct: 178 IGSTHNHTAPSL 189
>At2g28670.1 68415.m03485 disease resistance-responsive family
protein / fibroin-related contains similarity to silk
fibroin heavy chain [Bombyx mori] gi|765323|gb|AAB31861;
contains disease resistance response protien domain
Pfam:FP03018
Length = 447
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Frame = -1
Query: 257 SGPTEIGTNSSTMAGPTEIGSNSLTMAGPTE---MGSNSSMMAGPTAIGTKSSMMGAGPA 87
SGP + T SS GS SL G G+ S++ GP A GAGPA
Sbjct: 93 SGPGLLPTASSVPGSLAGGGSGSLPTTGSATGAGAGTGSALGGGPGAGSALGGGAGAGPA 152
Query: 86 TPG 78
G
Sbjct: 153 LGG 155
>At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding
subunit / ClpC almost identical to ClpC GI:2921158 from
[Arabidopsis thaliana]; contains Pfam profile PF02861:
Clp amino terminal domain; contains Pfam profile
PF00004: ATPase, AAA family; contains Pfam profile
PF02151: UvrB/uvrC motif
Length = 929
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 130 VGPAIIDEFEP-ISVGPAIVNEFEPISVGPAIVDEFVPISVG 252
+G +DE+ I PA+ F+P+ V VDE + I G
Sbjct: 406 IGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKG 447
>At3g29080.1 68416.m03641 hypothetical protein
Length = 445
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 257 SGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNS 150
SG TEIG ++ ++ +GS + T PT GS +
Sbjct: 323 SGQTEIGVSTRCISTSVVVGSEATTNTEPTTTGSRT 358
>At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4) /
basic helix-loop-helix protein 9 (bHLH9) / short under
red-light 2 (SRL2) identical to SP|Q8W2F3
Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (Short under red-light 2)
{Arabidopsis thaliana}; supporting cDNA
gi|18026965|gb|AF251694.1|AF251694
Length = 428
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 236 TNSSTMAGPTEIGSNSLTMAGPTEMGSNSS 147
TNSS+ TE+ S+T GP+ GSN S
Sbjct: 142 TNSSSGIRETEMEQYSVTTVGPSHCGSNPS 171
>At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4) /
basic helix-loop-helix protein 9 (bHLH9) / short under
red-light 2 (SRL2) identical to SP|Q8W2F3
Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (Short under red-light 2)
{Arabidopsis thaliana}; supporting cDNA
gi|18026965|gb|AF251694.1|AF251694
Length = 430
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 236 TNSSTMAGPTEIGSNSLTMAGPTEMGSNSS 147
TNSS+ TE+ S+T GP+ GSN S
Sbjct: 142 TNSSSGIRETEMEQYSVTTVGPSHCGSNPS 171
>At5g62940.1 68418.m07897 Dof-type zinc finger domain-containing
protein Dof zinc finger protein, Oryza sativa,
EMBL:AB028129
Length = 372
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -1
Query: 497 LGSNGSNVS--NLDRLGDGAIDNNH--GFSNDFGFVNDNHGLRDNGIDTGSGDNRGRASL 330
+G N N+ N GD +NH G ++ G N+N+ NGI TG N G L
Sbjct: 217 MGVNNDNLVMVNHGSNGDHHHHHNHHMGLNHGVGLNNNNNNGGFNGISTGGNGNGG--GL 274
Query: 329 VDV 321
+D+
Sbjct: 275 MDI 277
>At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family
protein
Length = 513
Score = 27.9 bits (59), Expect = 6.7
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -1
Query: 257 SGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPA-TP 81
S P+ G S + P S+SL A P+ SS+ GP+ T++ + G+ PA T
Sbjct: 410 SNPSS-GAGFSFLNTPASGPSSSL-FATPSSTAPTSSLF-GPSPTPTQTPLFGSSPASTF 466
Query: 80 GFTRPLVG 57
G T+ L G
Sbjct: 467 GSTQSLFG 474
>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
subunit (ClpC) identical to AtClpC GI:5360574 from
[Arabidopsis thaliana]; contains Pfam profiles PF02861:
Clp amino terminal domain and PF02151: UvrB/uvrC motif
Length = 952
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 130 VGPAIIDEFEP-ISVGPAIVNEFEPISVGPAIVDEFVPISVG 252
+G IDE+ I PA+ F+P+ V V+E + I G
Sbjct: 427 IGATTIDEYRKHIEKDPALERRFQPVKVPEPTVEEAIQILQG 468
>At1g29170.1 68414.m03569 expressed protein ; expression supported by
MPSS
Length = 1016
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = -1
Query: 425 FSNDFGFVNDNHGLRDNGIDTGSGDNRGRASLVDVQNDLHERSAVSNGGKRRVV-YDSGP 249
+ +D +++DNH L ++ S D+ GR ++ + HE V N + + S
Sbjct: 797 YMSDTDYLSDNHSLSNSEPWEESSDSHGRKE-QELYDSFHESRHVDNNAEASPLGIKSES 855
Query: 248 TEIGTNSSTMAGPTE 204
+ + N S + P E
Sbjct: 856 SCVAVNLSYLQNPAE 870
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 27.5 bits (58), Expect = 8.9
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Frame = -1
Query: 257 SGPTEIGTNSSTMAGP-TEIGSNSLTMAGPTEMGSN-SSMMAGPTAIGTKSSMMGAGPAT 84
SG IG S GP + S GP G S M G + G S M GP +
Sbjct: 162 SGARPIGFGSPPPMGPGMSMPPPSGMPGGPLSNGPPPSGMHGGHLSNGPPPSGMPGGPLS 221
Query: 83 PGFTRPLVGP 54
G P++GP
Sbjct: 222 NGPPPPMMGP 231
>At1g75520.1 68414.m08776 lateral root primordium (LRP)
protein-related similar to lateral root primordium 1
(LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
profile PF05142: Domain of unknown function (DUF702)
Length = 346
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = -1
Query: 302 RSAVSNGGK--RRVVYDSGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSS-MMAGP 132
++AV+ GG + ++YD GP + + T +N A T G+N++ +M P
Sbjct: 264 QTAVNIGGHIFKGILYDQGPEHQDNHHLNLLASTATTTNVEETATKTVTGNNNNGLMLDP 323
Query: 131 TAIGTKSSMMGAGPATPGFTRP 66
+++ + + TP FT P
Sbjct: 324 SSL-YPAQLNSFIAGTPFFTPP 344
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,892,232
Number of Sequences: 28952
Number of extensions: 254409
Number of successful extensions: 1010
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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