Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0669
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529... 31 0.76
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493... 29 3.1
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761... 29 4.1
02_01_0100 + 743467-744868,745066-745127 29 4.1
05_04_0452 - 21373876-21375531 29 5.4
05_07_0199 + 28365335-28365603,28367687-28368554 28 7.1
04_04_1055 + 30444235-30446649 28 7.1
10_08_0272 - 16387422-16387427,16387428-16387526,16387688-163881... 28 9.4
05_01_0409 + 3230761-3230856,3231463-3231560,3232747-3233386 28 9.4
02_01_0752 - 5583757-5584092 28 9.4
01_06_0128 - 26727484-26728383 28 9.4
01_06_0049 - 25953811-25954131,25954223-25954903 28 9.4
>03_06_0758 -
36052261-36052301,36052463-36052697,36052895-36052966,
36056477-36056567,36056650-36056872,36056964-36057300,
36057406-36057588
Length = 393
Score = 31.5 bits (68), Expect = 0.76
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 223 SDH-PLPVDDRATASKHSAGWIHHAEGGVVGVLTGSR 116
+DH P P DDRAT+ H HH GG G G R
Sbjct: 80 ADHSPSPRDDRATSWDHGRHHHHHNSGGRRGSFGGRR 116
>01_06_0102 -
26447286-26448107,26448248-26448385,26448990-26449359,
26449505-26449606,26449696-26449788,26449934-26450181,
26451088-26451274,26451825-26452043,26452464-26452660,
26453545-26453875,26454099-26454457,26455141-26455240,
26455349-26455464,26455547-26455663,26455782-26455880,
26456057-26456131,26456205-26456286,26457724-26457763,
26458685-26458769,26458924-26459055
Length = 1303
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 512 WCYSRGPELGILACCRQPDLRPQLRHPDYA 601
WC+ R P L IL C + + + HP Y+
Sbjct: 229 WCHPRAPNLDILTCVKDSHIW-AIEHPTYS 257
>05_03_0619 +
16274255-16274396,16274775-16274848,16275111-16276139,
16276484-16276702,16277228-16277250,16277482-16277606,
16279480-16279670,16280202-16280360,16281359-16281598
Length = 733
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Frame = -1
Query: 253 RDASGNTVSCSDHPLPVDDRATASKHSAGWIHHAEGGVVG----VLTGSRL--PTRYNTE 92
+D G + H +P++ +++ SK W+++A VV L +R+ P Y+
Sbjct: 356 QDLKGINPALCTHRIPIEPKSSPSKEPQRWLNNAMREVVKKDVLKLLHTRIIYPVPYSEW 415
Query: 91 ICGIYIFVDIFNEV 50
C + IF D+ E+
Sbjct: 416 RCMMSIFSDMIEEI 429
>02_01_0100 + 743467-744868,745066-745127
Length = 487
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -1
Query: 214 PLPVDDRATASKHSAGWIHHAEGGVVGVLTGSRLPTRYNTEICGIYIFV 68
PLP DD ATA S W++ + V S T ++T G+ I V
Sbjct: 25 PLPADDDATAGV-SPSWVYLEDRAYVSPDAVSNSTTAFSTTTTGVSIHV 72
>05_04_0452 - 21373876-21375531
Length = 551
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -3
Query: 719 GHTDQNRYT--LRIHVDEWTAAVTLASRL*RHIEESGADRIRRNQGAEVEGASRVGDSTQ 546
GH +R+T + TAA+ L ++ H+ SG D Q + +E +R GD
Sbjct: 113 GHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLAL 172
Query: 545 VYPVQD 528
+ V D
Sbjct: 173 AHKVFD 178
>05_07_0199 + 28365335-28365603,28367687-28368554
Length = 378
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 650 ASRL*RHIEESGADRIRRNQGAEVEGAS 567
A+++ + +E G DRIR + G +EGAS
Sbjct: 286 AAKILQWFKEEGQDRIRAHSGPRMEGAS 313
>04_04_1055 + 30444235-30446649
Length = 804
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 565 RLAPSTSAP*LRRMRSAPDSSM*RHSLLARVTAAV 669
RL S A LRR RS PD+++ R+SLL ++V
Sbjct: 122 RLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSV 156
>10_08_0272 -
16387422-16387427,16387428-16387526,16387688-16388122,
16388408-16388738,16390821-16390961,16391668-16391736,
16392077-16392312
Length = 438
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 229 SLCCRTHHGVIRAGVTNLTTPEYISESTEWYNYPTYDD 342
+LCC+ G R N +P + SES W +DD
Sbjct: 101 NLCCQPFQG--RRAKLNACSPHFESESLNWPGLMEFDD 136
>05_01_0409 + 3230761-3230856,3231463-3231560,3232747-3233386
Length = 277
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +2
Query: 362 SPTTSLY*DSI--DRSSLPDTSSQFVCNRRLMPSGTTTDSPCMPAVMVVSGEWCYSRGPE 535
S TS + D I S + + S + C +P+G+ TD+ P+ +S + + P+
Sbjct: 58 SENTSYFRDEIISQYSPMSEDSDDYRCYDTQLPNGSQTDAMVSPSTSPMSSPHRFQK-PQ 116
Query: 536 LGILACCRQP 565
G+L+ P
Sbjct: 117 SGLLSANPYP 126
>02_01_0752 - 5583757-5584092
Length = 111
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 180 NTPPVGSTMRRAAWWG 133
N PP G +RA WWG
Sbjct: 3 NVPPAGGRRQRAWWWG 18
>01_06_0128 - 26727484-26728383
Length = 299
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 164 DPPCGGRRGGGADRESPPNQI 102
D CGGRR G RE PP Q+
Sbjct: 23 DEGCGGRRVGSMVRELPPAQM 43
>01_06_0049 - 25953811-25954131,25954223-25954903
Length = 333
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 566 DLRPQLRHPDYAECDLRQILQCDVTVY 646
+LRP +RHP Y R +L DV Y
Sbjct: 287 ELRPVIRHPRYKTAVCRMVLAGDVCPY 313
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,602,679
Number of Sequences: 37544
Number of extensions: 638203
Number of successful extensions: 2160
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2159
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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