Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0669
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    36   5e-04
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    28   0.083
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   1.0  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   4.1  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   4.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.5  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 35.5 bits (78), Expect = 5e-04
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +2

Query: 95  RIVSGWEATPGQHPHHAALRMVDPTGGVFACGGSIVHREWVITAAHCVAGRITGSFA 265
           RIV G      + P  A ++     G +  CG +I+ + +V+TAAHC+    T   A
Sbjct: 160 RIVGGTNTGINEFPMMAGIKRTYEPGMI--CGATIISKRYVLTAAHCIIDENTTKLA 214



 Score = 34.3 bits (75), Expect = 0.001
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +3

Query: 510 NGATPEVLNWVYLRAVANPTCALNFGTLITPNAICARFFNVTSQSTCQGDSGGPLVHVDP 689
           NG    +L    L  +    C   +G ++  NA+CA       +  CQ DSGGP++  +P
Sbjct: 303 NGMLSHILQKTTLNMLTQVECYKYYGNIMV-NAMCAY---AKGKDACQMDSGGPVLWQNP 358

Query: 690 QGVPIL-IGVTSFVAGGEFG 746
           +   ++ IG+ S+  G E G
Sbjct: 359 RTKRLVNIGIISW--GAECG 376



 Score = 27.5 bits (58), Expect = 0.14
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 325 YPTYDDTRPNLVQPNDISLLRLHRPVVFTRYLQP--IRVQSSADAFRNYDGLTVYASGH 495
           +P YD    +  Q NDI+LL+  + + F   + P  +  Q   D+F   D +TV   GH
Sbjct: 242 HPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSD-VTVLGWGH 299


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 0.083
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 100 NTEICGIYIFVDIFNEVGLDFLGKALPTKHK 8
           N E+CGIY   +   ++ ++F+   +P +H+
Sbjct: 88  NEEVCGIYFLAEPDQKIEINFITFDIPCEHR 118


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 176 VFACGGSIVHREWVITAAHCVAGRITGSFAPALRT*P 286
           ++AC      R +V     C  GR+   + PA R  P
Sbjct: 389 IYACWSRDFRRAFVRILCACCPGRVRRRYQPAFRCKP 425


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 707 DRCDLLCCWR 736
           D CDL+CC R
Sbjct: 111 DGCDLMCCGR 120


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 707 DRCDLLCCWR 736
           D CDL+CC R
Sbjct: 112 DGCDLMCCGR 121


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 497 VVSGEWCYSRGPELGILACCR 559
           + S E  Y  G  LG+ AC R
Sbjct: 744 IASMEILYKPGDHLGVFACNR 764


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,044
Number of Sequences: 438
Number of extensions: 5820
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)