Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0668
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    27   3.8  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    27   3.8  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   3.8  
SPAC24H6.02c |||TIM23 translocase complex subunit Tim15|Schizosa...    26   5.1  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   6.7  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    26   6.7  

>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 572 AARSLSHTRTTFSQNSLLAANMINSRMCSGY*RIWGVLVVFLCANN 435
           A + L    TTF+     A+N   +       ++WG+ V+F C NN
Sbjct: 197 AQKYLEKPTTTFALYGDGASNQGQAFEAFNMAKLWGLPVIFACENN 242


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 578 EGAARSLSHTRTTFSQNSLLAANMINSRM 492
           EGA R    TR+ F+  S LAAN I   M
Sbjct: 574 EGAVRPFILTRSFFAGTSALAANWIGDTM 602


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
 Frame = +1

Query: 541 VVLVWDSERAAPSLKSLSRMAGDSRDPLPVIVVDATTHY-PGEGVSARWQPLWAVPTAAV 717
           +VL+ DS+   P+         D    LP +V D    Y P EG   R    W +     
Sbjct: 224 LVLIRDSKLPLPAGVVYDSPWVDLTHSLPSVVADDAADYIPSEGFHHRASRYWPITNLDS 283

Query: 718 FSLDGDAPLL 747
           FS   +  LL
Sbjct: 284 FSTISEKELL 293


>SPAC24H6.02c |||TIM23 translocase complex subunit
           Tim15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 256 KLTTENCLTILNIKSNRNKKKKTSLKFCT 342
           + T + CL  L +K+  NK K +SL FC+
Sbjct: 6   RYTQKFCLRNLQLKNFSNKVKVSSLLFCS 34


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 420  ECCPRVVRTKENN*YPPYPLVPTTHSAIDH 509
            EC  +V    E   YPP  L+  T S +D+
Sbjct: 1109 ECWAQVKSAVEEKQYPPIDLILNTRSTVDN 1138


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 213 DTAYAAGDRIELPLKTDNR 269
           D ++ AGDRIE+  +TDN+
Sbjct: 425 DLSFHAGDRIEVVSRTDNQ 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,486
Number of Sequences: 5004
Number of extensions: 53244
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)